Cpra016695.1
Basic Information
- Insect
- Cryptocheilus praepositus
- Gene Symbol
- -
- Assembly
- GCA_033815515.1
- Location
- JAWWQZ010000284.1:5837235-5840739[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.91 1e+02 4.2 0.4 2 23 535 557 534 557 0.91 2 14 0.0012 0.13 13.2 0.3 1 23 561 583 561 583 0.98 3 14 9.9e-06 0.0011 19.8 1.9 1 23 589 611 589 611 0.96 4 14 0.0044 0.49 11.4 5.5 1 23 620 642 620 642 0.96 5 14 8.8e-06 0.00097 19.9 0.7 1 23 648 670 648 670 0.97 6 14 3.4e-05 0.0038 18.1 0.3 1 23 675 697 675 697 0.96 7 14 0.092 10 7.3 4.7 1 23 704 726 704 726 0.98 8 14 0.00032 0.035 15.0 1.2 2 23 746 768 745 768 0.95 9 14 9.9e-05 0.011 16.6 0.4 2 23 779 801 778 801 0.96 10 14 0.00057 0.063 14.2 1.3 1 23 807 829 807 829 0.96 11 14 1.1 1.3e+02 3.8 1.4 1 23 835 857 835 857 0.96 12 14 8.3e-06 0.00091 20.0 0.9 1 23 863 885 863 885 0.96 13 14 0.00021 0.023 15.6 2.0 1 23 891 913 891 913 0.98 14 14 0.00012 0.013 16.3 0.6 1 23 918 941 918 941 0.96
Sequence Information
- Coding Sequence
- ATGAATGTTGTGTGTTGTTCGATAGGTTGTACGTGTGTATCGGAAAACGATAATGCGCATGTTGTTCTTGTTAATTTTCCGAATGACAATTCGAGCAGACTGTGGATACGGAATTGCTGCAGCACGGAATTAGGAATGAAATCTAATGATAAACTACATCTGAATTATTAcgtttgttataattataaagaaGATCGCTGTTATATAAGTAAGACAGATTCAGTTACATTGGCAGAGCAAGATGCAGTTTCAATGTGCAAAATGCCGATTCCTTTGGAAAGAGACAATGTCAGCGATGCCTTTAATGCAAAGGCTCAAGCAGAAGTTGCCTATGATGTTGTTCAGACGCACTGCAATACAAATAATGACGTAAACCAATGTCAATATGTGTCTATTTATTTATCTGATTTATGTAGAATATGTGGAGAATCTGCATCAGATGGAATAGGTATGCATACCGCTAGGGGACTTGAGGTTCAGTTGAAAGATAAGATTAACTTACACATGCCTATTTTGGTTGACCAAAAAGACACAATTATGCCTCAAAAAGTATGTATAGGATGTTACAATAAATTGGATATTGTACACTCACTGGCAGTGACTTGCCTAAGAACTGACATGAAGCTAAGGAAGTTATTAAGAGTCAACCGAAAGACAGAATATACAGGCAAGTGTGGAACGTTAATAAAGGAGTGTTGGTTAAAATTTGCTGAAGAAATACACACAGAAGGGAAAGCTGCTACTCCCTCACACTTCCCATCTCAGAACATTAGCCAATTGTTAAACACCGCCAATGTGCAAAAACTCGCATTTGCCAATGACTGCAAGAATTCATGTCAAAATACCATTTTGGTGGCCACAGCAAAAAATGCTGCTCATAATTCGTTACTCGACATTACAGACAACAATCCGGATGAACTCACGAACGGGATCGTACACGTggataacgaaataaatattgaaagaattttCTCGAAAAACGGAGAAACAGGAAGCACGCAAGCATCAACAACATTTCTGGCAAATCAGGATACTCAACTGAAAAACGACGAAGAGCCCTTTCAATGCAAAGTCGTAGGTATATATGCGAATTCTAGTCAGGACGCAAAAAATATACAGGAAACTGAGCAAGAGTTAGCTACAATGCCAGAAAAATCATCTAGAACCAACAACCTAACGCCAGAGGACTGTGAATTTTCAGGCAGTAATTTACAGCATTTTGGCCTCATAGACGATGATCATGCGAGCAAATGCACTCGCAAGGAAATAAATGCGCACGCGGAAGCTGCGAATACAAAATGCGTGAAAAATGCTCTCAGTAATTCGGCGCTTGACATTATACAAAAGAATCCGACTGAAGAGGTTTCCTCAAAAAACGAAGATACAGGTACACATACGGATTCTAGTTCGGCTGTAAAAGGAAAACTGGGAGCTGAGCAAGAGTTAGCCCCAATGTTAGGAAAATCGTGTACAAGCCATAACGTAACGGCAGAAGGCCGTGAGCTCTCAAACAGTAATTTAGAGGATCTCTGTATGACAGATGATGGTGCGAGTAAGTGCACCCGTCCGGAAATAATTGAGCATGCGGAAACGTCGAACACAAGATGCGGCTATTGTCAAGTGATCTATCCGACAGGTCGCGATCTAGCGAGCCACGTTGGAAAATGTCACGACGGCGTGTTCAAGTGCTTTGCCTGCGACAGGACGTACGAGAAATGGTCGAGCTTGGACATACACGTGGCCACGCACGGTGTGGCCAGGCCTTATCTCTGCGATTTGTGCGGCAAAGGCTTCAAGCACGCGAATAACCTGCGGGGTCACAAGCGAACGCACCTCGAGGAGTCAAGAAAGAAGAGACACGTCTGCGGACAGTGTGGCAGCGGATTCAGGTCCAGATTCCATCTGCGAGAACATATGCATCAGCATCAAGGTACGAAGCCCTATGCCTGCGAAGACTGCGGCAAGGCCTTTTATAAGAAGATCCAGCTGAGACAGCATAAGCTGTCCCACGGCACGAAGAAACACGCCTGTCCACTTTGCGGCGTGGCGTTTAATCGCAGGGGCAACATGAGTGCCCATCTTAAGAGACACGTGCACGGGGATGGTGTGTATACGTGCAGTgTCTGCGCGCATCGATGTGACACCATGAGCGAATTGAAGCTACATCGGAAGAACCACACAGACGCGGACATTGTTAGGAAGATGCAAGAAAAATCGTCGAAGAAAGCGATATGGCAGTGTCAGATTTGCTCGCGCGTCTTCTCAAAACGCTCTGTTCTCGAGCATCACGAGCAACGTGTGCATGTCAGCGCCGAGAAGAGAGTCGGCTCCGTCGAATGTAACGAATGCGGCAAGAAACTGGCGAGCAAAAGCTCGCTGTTGTATCACCGGAAATCTGTGCACTTAAAAGACAGAGCGCACGTTTGCCAATATTGCGGGAAGGGCTTTGTGTCGCGAGAATCGCGACTTAATCACGAGAGATTACACACAGGTGAACGTCCCTACATCTGCCTAGTATGTAACGCACGGTACAGATGTTCCAGTATTCTCAGTCAGCACATGAAGATCCATTCGAACGTGAAACCCCATGCGTGCAATTACTGTGGCAAAGGTTTTACGCGCAAAAGCGCCGTCGACGTACATGAGAGAACTCATACAGGCGTGAAACCATTCAGTTGCCAGCTATGCGATGCCAGCTTCTGTCAGAAGGGCGATATGTTGAAGCATGCGAAAACCCACAGTTCCAAGCGATTTCAATGTAAACAGTGCGACGAAATATTTCGGCTGAAGAAAGATCTGCTGTCGCATGTTCGGGGTCTACATGTTGGGATATTCGCTGATAATAGTTCACAAGATATCAATTAA
- Protein Sequence
- MNVVCCSIGCTCVSENDNAHVVLVNFPNDNSSRLWIRNCCSTELGMKSNDKLHLNYYVCYNYKEDRCYISKTDSVTLAEQDAVSMCKMPIPLERDNVSDAFNAKAQAEVAYDVVQTHCNTNNDVNQCQYVSIYLSDLCRICGESASDGIGMHTARGLEVQLKDKINLHMPILVDQKDTIMPQKVCIGCYNKLDIVHSLAVTCLRTDMKLRKLLRVNRKTEYTGKCGTLIKECWLKFAEEIHTEGKAATPSHFPSQNISQLLNTANVQKLAFANDCKNSCQNTILVATAKNAAHNSLLDITDNNPDELTNGIVHVDNEINIERIFSKNGETGSTQASTTFLANQDTQLKNDEEPFQCKVVGIYANSSQDAKNIQETEQELATMPEKSSRTNNLTPEDCEFSGSNLQHFGLIDDDHASKCTRKEINAHAEAANTKCVKNALSNSALDIIQKNPTEEVSSKNEDTGTHTDSSSAVKGKLGAEQELAPMLGKSCTSHNVTAEGRELSNSNLEDLCMTDDGASKCTRPEIIEHAETSNTRCGYCQVIYPTGRDLASHVGKCHDGVFKCFACDRTYEKWSSLDIHVATHGVARPYLCDLCGKGFKHANNLRGHKRTHLEESRKKRHVCGQCGSGFRSRFHLREHMHQHQGTKPYACEDCGKAFYKKIQLRQHKLSHGTKKHACPLCGVAFNRRGNMSAHLKRHVHGDGVYTCSVCAHRCDTMSELKLHRKNHTDADIVRKMQEKSSKKAIWQCQICSRVFSKRSVLEHHEQRVHVSAEKRVGSVECNECGKKLASKSSLLYHRKSVHLKDRAHVCQYCGKGFVSRESRLNHERLHTGERPYICLVCNARYRCSSILSQHMKIHSNVKPHACNYCGKGFTRKSAVDVHERTHTGVKPFSCQLCDASFCQKGDMLKHAKTHSSKRFQCKQCDEIFRLKKDLLSHVRGLHVGIFADNSSQDIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -