Cpra008886.1
Basic Information
- Insect
- Cryptocheilus praepositus
- Gene Symbol
- -
- Assembly
- GCA_033815515.1
- Location
- JAWWQZ010000200.1:65849-70492[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.16 17 6.6 6.6 2 23 261 283 260 283 0.96 2 22 0.095 10 7.2 1.5 1 23 328 350 328 350 0.97 3 22 4.8 5.3e+02 1.9 0.1 1 19 357 375 357 375 0.96 4 22 0.015 1.6 9.8 0.4 1 23 399 421 399 421 0.98 5 22 0.049 5.3 8.2 0.1 1 20 477 496 477 498 0.93 6 22 1.6 1.8e+02 3.4 3.3 1 21 510 530 510 533 0.79 7 22 0.011 1.2 10.2 3.8 1 23 538 560 538 560 0.97 8 22 0.00055 0.06 14.3 0.1 1 23 603 625 603 625 0.97 9 22 0.0007 0.077 13.9 0.1 1 23 631 653 631 653 0.97 10 22 3.1e-06 0.00034 21.4 1.4 2 23 700 722 700 722 0.96 11 22 0.0091 1 10.5 3.3 1 23 729 752 729 752 0.94 12 22 0.013 1.4 10.0 2.2 2 17 760 775 759 782 0.87 13 22 6.5e-05 0.0071 17.2 0.1 2 23 791 812 790 812 0.92 14 22 0.33 36 5.6 0.1 1 20 874 893 874 893 0.95 15 22 0.00024 0.026 15.4 0.1 2 23 913 934 912 934 0.96 16 22 0.00019 0.02 15.8 2.0 2 23 948 969 947 969 0.97 17 22 0.00042 0.046 14.6 4.0 1 23 991 1014 991 1014 0.93 18 22 0.25 28 5.9 1.1 2 23 1081 1103 1080 1103 0.94 19 22 0.0061 0.67 11.0 0.5 2 23 1130 1152 1129 1152 0.92 20 22 0.00042 0.047 14.6 0.3 1 23 1158 1182 1158 1182 0.95 21 22 0.031 3.4 8.8 3.0 1 23 1187 1210 1187 1210 0.97 22 22 0.043 4.7 8.3 1.1 2 23 1240 1262 1240 1262 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGTCGTCGAGCTGGAGAACGTCGAGAACGTGTGCAGGTTGTGCCTGGTGAGCGACGAGCCGAAGTCCTCGATATTCGGCGCTGACTCTGAAGCCGAACTTCCGTTGGCGGCCAAAATACAGGCCTGCCTGTCGATACAGATATCAGTTACCGACAGGCTTTCTACGTTAATATGTTCAAACTGTATAAAAAACGTAAATCAATGGCACAATTATCGAGAGTCCTGTCTGCGTTCCCAAGACAAATTGCATCAGTGGTTATCCAATCATTTACAGTCTACTCCTGCAGTTGTTACGATCAAGGATGAACCAGTTGATTTGGATTTTTACGAAGATAACGTTGAAGTCTTATCAGAGTCTACGAGTAACTCTGAAtcaCATGTTGTAGATCCAGTGGTTCCTACAAATGAAGTCCCCACAGTAACAGACGAACCTATTGAGGAGATAAGGACTGAAAGTGTACAAGATGTCGAGAAAGATAAAGAAAATGAAGGTTCGTGCAATACAAGCAAAAGCTCGGAAAAAGATTCTGACACCGAGAAAATGTCTTGTACTATTAAGACCGAACCGGAGGATTACGATACGGATTGCACGATAGAGATAGAATCCGTAACAGGCCATGAATTTTTAATCAGTCCGATCGAAGGTGGAAGAGACGACACAGTGATGGAGGCTGATTCGACACAAAAATCTAGCTTGACGAATTCCGCCAGCAAGAAGAAAATCCGCCGTGGTCCTCATACCCATTTCCGTGGAACGCgtcttttcaaacaaaagtgcAAGCATTGTCAGATAAACTTGCACTCGAAGTATTCCTACCAGAGGCATATGGAGAGATTTCATAGTGCATTAAGCGACGACATGCGGCAGGACGAGGAAGAAATGATCGAGGATCTAGAAGATGAGTTGGTGAGCATGGAAAAAGACTCTCCCCTAACTCAGGTGCAGCAAAGTATTATAAGTCAATTGAAGACGTTCAGCTGTTATTCGTGTCAAGAAAATTTCATCGATCGCCGAAGTACACTGTCCCATATACGACAACATATGCCCGATTTACGGCCCTACACGTGTGTCGCGTGTCTAACAGAGTTTCCTGATCGTTCCATGTATAAGTTACACTGTAGCGTATCCTTCGAGTGTGCCATGAAAATCGCGTTGGTTATACCTAAGCACGGCCAGGAGCAGTACTTCACTTGCAACATGTGTTTACGCCCATTACCGAACAGGAGGGAGCTGTTAAGCCACTTATCTAGACATTCTGATAAGCAGTACGAGGAATTGGTGTCGCCGACTAGATCGCCACCTAAGTTGAAACCAATGACACCACTGCCAGAGGTGCCGAAGACGGGTACCACTTCGAAAACCCCTCCAAAGATTCCTGTTATACCTCATCCGTATAAAAATGGAGATCCCGCGCATAATCACATTTGCGACCTCTGTGGTATGATCTACAGATACAGGCCGAACATGCTGAAGCATCGAGAGCTTTGTTCGAGACTTTTGCCCGCGGCAAGGACGTCTTACAAATGCGTACACTGTGGCATGACGTTCCTTGTGTTCAAGAAGTTCCACAGTCATATCACTGCTGATCACAAGAAGAAAGAATTCACCTGCTCACGCTGTAACAGCAAATTCCGGTCGCCCAGCGATTACTTAACACATCATGAAAGTCACCGAGTGATAAATGGTGAGACGGTGCAGGATGATCTGAATAATGATAAAATCCAGAGCCCGTTGAAAGAGTGGGACAGTTTCGAGGAAGAGGTAAACGCGAATAAGACAAGGATAAGCAGTCAAAAATATAGTTGCGCGCTTTGCGGCCAAGAATTCCCCAGTCGAGCAGAGTTGAGTGAACACAGAAACTTGCACTTGAAAGTGAAGATCTACTCGTGTGTAATTTGTCGCAGTATGTTTAGCAGTGCCGGAGCTCTAGAGATTCACATGAAGGATCACGGGATAGAGGATCCGAACGAACGTAATGCCAACAGTTCGTGCGTTGAGTACGGTCAACTTGAGGAAGACGCACAAGATACGCAGGACGGAAATTCTCTTAACAATTCCACAATGTCAGACCCCGGTGTAAAGCACAACGAATGCGATAGCTGCGGCAAAATATTCTCGAACTGCGCGAACCTAAGGCGACACATCAGGAACATTCACAAAGCGAGAAAAGAGCGGTTCGAATGTACCGACTGTTCGAGATCCTTCAAAACCAAGGAGTTACACGATCGTCACACGCGTCTTGAACACAAGGTCCCGAAGCCGATGTTGAAATGTCCAAAGTGTCCAAAATCGTTTGTCTTCCGGGCGAATCTGAACTTCCACTGTCAGAGTGCCCATAACGTTAATGCAGAGGCAAACCAAGAGTGCGATATCTGCGGCAAGGTCTTCCGCGAAGAATCATCCCTGAAAATACATAAAGGCTGGCACAATCGGGCGAACTCTAGACTGAACTCGAGATACTTCATGGATAACGAGCAATCGCCTGAAAAGAGGCACTCCATATCTGTGCAACCCGTTGTAAGTCctacgacgccgacgacgagcACAGATAGACCAGCTAGAGCGAGAAAAAGTTTCCCTAATCCACCTCCAACGAAGCCACAAGGTGAGTTCAAGTGCCAGGTCTGCGACGATCGTTTCACCGAAGTAATTCAGTTAAGGGAACATCTCTGGGATGTACATTGTGCCCGGAACAAACCGGAGAAGAGCTTCTCCGGCGATGAACTGCAATGCGAACTCTGCACAAATGTTTTCCCCGATCAAGAAACCTTGAAGATTCATATGCAGTGGCACAAGGATCATCCTATCTTAAGCGACCTACGGAAATCAGTACAGTGCGACATATGCGGTAAACACTACAGTTCGAAGAAGGTCCTGTGGAAGCATAAGAAGCTGCATAAAGCCACCACCGTGGCCACCATGAAGTTCCAGTCGCTGTCGAAGAAGCACGTTGCGAATCAGTTCCTCTGCACGATTTGCCGCAAGGTATTTTGCAGCAATCAGTCTTTGCAGCGACACAAAATATCCTTCCACAGTGACCCGGCGCCTGTGCAGCCTGCGCCAAACGTGCAAAACGTGCAAAGCAACACTGCCGTACAAAACGGCAGTTCTCCGCGAACTTCGACGGAGGAGCCAAAAGTGAAGAAAGTGAAGATGGAGCAAGAAGACGACCCGGCCAACGCAAAGTTACCGATCGTCGTCAATACAGTAAACGCGGGTAGAAAACCGGTCATGTGCCATGTGTGCACGAAACTTTTCCCGAACATGAGCATTCTCTACAAGCATAAGCAGATGGTGCACAAAACACGGGTCGGCAAGCTAGCGAGTAAAGTACCGATGAACGAGTGCGTTCCGTTCCTAGGAACCGACGGCAAAGTGTCGTGTAACATTTGCTTCAAGCAATTCGCTGGCATTTCGAACCTTCGTCAGCACTTCACCATCAAGCACAAGAGCAACCCGAAGTACTCGTGTCATATCGACGGCTGCAACATGGTGTTCAGTACGCCTGTTACTCTCAAGAATCACGAGGCACTGCACACGAGCATGATCTTCTGCTGTAACCTGTGCGATCGTCACGTTTTCAGCAAACCAGCAATGACCAACCACATGCTAACGGTACACAATACCATTTACGAGGCGGAGAATAATAAGTCTTTTCACAGAGAGGCGGATTTGCGCACGTACGAAGTTCAAGACGCGGTGAACGCTACTTGTCCGAAGTGCAAGATTAAGTATCCGAACAACAGGGCAATGAAGATTCATTACTTCAAATTTCACGAGACTGTGGACTAA
- Protein Sequence
- MDEVVELENVENVCRLCLVSDEPKSSIFGADSEAELPLAAKIQACLSIQISVTDRLSTLICSNCIKNVNQWHNYRESCLRSQDKLHQWLSNHLQSTPAVVTIKDEPVDLDFYEDNVEVLSESTSNSESHVVDPVVPTNEVPTVTDEPIEEIRTESVQDVEKDKENEGSCNTSKSSEKDSDTEKMSCTIKTEPEDYDTDCTIEIESVTGHEFLISPIEGGRDDTVMEADSTQKSSLTNSASKKKIRRGPHTHFRGTRLFKQKCKHCQINLHSKYSYQRHMERFHSALSDDMRQDEEEMIEDLEDELVSMEKDSPLTQVQQSIISQLKTFSCYSCQENFIDRRSTLSHIRQHMPDLRPYTCVACLTEFPDRSMYKLHCSVSFECAMKIALVIPKHGQEQYFTCNMCLRPLPNRRELLSHLSRHSDKQYEELVSPTRSPPKLKPMTPLPEVPKTGTTSKTPPKIPVIPHPYKNGDPAHNHICDLCGMIYRYRPNMLKHRELCSRLLPAARTSYKCVHCGMTFLVFKKFHSHITADHKKKEFTCSRCNSKFRSPSDYLTHHESHRVINGETVQDDLNNDKIQSPLKEWDSFEEEVNANKTRISSQKYSCALCGQEFPSRAELSEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCVEYGQLEEDAQDTQDGNSLNNSTMSDPGVKHNECDSCGKIFSNCANLRRHIRNIHKARKERFECTDCSRSFKTKELHDRHTRLEHKVPKPMLKCPKCPKSFVFRANLNFHCQSAHNVNAEANQECDICGKVFREESSLKIHKGWHNRANSRLNSRYFMDNEQSPEKRHSISVQPVVSPTTPTTSTDRPARARKSFPNPPPTKPQGEFKCQVCDDRFTEVIQLREHLWDVHCARNKPEKSFSGDELQCELCTNVFPDQETLKIHMQWHKDHPILSDLRKSVQCDICGKHYSSKKVLWKHKKLHKATTVATMKFQSLSKKHVANQFLCTICRKVFCSNQSLQRHKISFHSDPAPVQPAPNVQNVQSNTAVQNGSSPRTSTEEPKVKKVKMEQEDDPANAKLPIVVNTVNAGRKPVMCHVCTKLFPNMSILYKHKQMVHKTRVGKLASKVPMNECVPFLGTDGKVSCNICFKQFAGISNLRQHFTIKHKSNPKYSCHIDGCNMVFSTPVTLKNHEALHTSMIFCCNLCDRHVFSKPAMTNHMLTVHNTIYEAENNKSFHREADLRTYEVQDAVNATCPKCKIKYPNNRAMKIHYFKFHETVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01255860;
- 90% Identity
- -
- 80% Identity
- -