Cpra006075.1
Basic Information
- Insect
- Cryptocheilus praepositus
- Gene Symbol
- -
- Assembly
- GCA_033815515.1
- Location
- JAWWQZ010000132.1:767360-769733[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.7e-05 0.0029 18.4 1.9 1 23 302 324 302 324 0.97 2 12 0.0035 0.38 11.8 4.0 1 23 328 350 328 350 0.98 3 12 0.0015 0.16 12.9 5.4 1 23 355 377 355 377 0.96 4 12 0.00046 0.051 14.5 2.5 1 23 429 451 429 451 0.98 5 12 0.00079 0.087 13.8 1.4 1 23 456 478 456 478 0.97 6 12 9.9e-05 0.011 16.6 2.2 1 23 527 549 527 549 0.98 7 12 0.00029 0.031 15.2 0.9 2 23 557 578 556 578 0.97 8 12 9.9e-07 0.00011 22.9 2.1 1 23 588 610 588 610 0.96 9 12 0.00022 0.025 15.5 1.6 1 23 616 638 616 638 0.97 10 12 0.00016 0.017 16.0 0.7 1 23 644 666 644 666 0.98 11 12 4.7e-06 0.00052 20.8 2.0 1 23 672 694 672 694 0.96 12 12 8.4e-05 0.0093 16.8 0.3 1 22 700 721 700 721 0.96
Sequence Information
- Coding Sequence
- ATGAATTCAGGGTATTTTAGCTTACCCCTTAATATGGACAGAGTATGTAGGATTTGTCTATCAGAGGGTACAAATTTATCACCTATTTTTTGTGCGGATCAAGAAGTAGATGATTTCTCCGGTCTACCGCAAAAGATTCAAATATGCGGATCGATCGATATACACGAACAGGACGGATTACCGTCATTGATATGCGACGTATGCATCTACAAAGCGAGCGTAGCTCACGAGTTTAGGCAACAATGTCAACATTCCGATGTAAGATTacgaatgtattataataagcCTGCTAAATGTAATGTCACGgaTTCGTGCACGCAGACAGAACCAGAATCTAGAATTATGTTAACTCCAAAATTGACCGCTTCTCAGGATAGTTATTTCATCAAGGAAGAGATGCAGGTAGCGTCGAGCGGTCAGGAATTTACACAGACTACCGACTCTTACTCTAGGAGCGAACCGAGTTTGAATGACGCTCAAATCGACATGCAAGATGACAAATTATTCATGTGCACTATAGGATTTGAAGGGTCTAAAGAAATGGAAAAGGAATCGTGCGTGTCGCAAACAGATATTCATGGAACGACAGTTCTGGAAGCAACTTCTGAAGTCGTCACGCACGCTATGTCTGAAGTTTTACCTATAGGAGGGAACAAAGAGCAAGATGAGCAAGCTTCcttgaaggatttggaaaaaggTGATAGAGAGCAGGCGGATGAATTTTTAGATGAACATATTCAGAATGATGTgacggaagaggaagaggaggatgTAGTTCCGCAAAAGCGAACATCGTCACGGAAAGCAAAGCCGATACCGACTAAAGCGTATAGCGAGGATGACACAGACGATAATTATTACGATCCGAACAATAGCGATAGTCAAGATTCGGaggaattgaaatttaaatgtaaaatatgttcaaagaGGTACGCTACGCAGAAAGGCCTAAAAAAGCATTCTCTCGTTCATGAGAAGAAACACAAATGTAACATATGCTTGAAACTGTTTTATAAGCAGGAAAACATGGAGAAGCATAAAAAGATACATGCCTCGAAACCGCACGCTTGCCAATTGTGTCACGCATGTTTTTCGAAGCCACAGAGTCTTGTACGTCATCTGAAGTCGCATACGGAGAAAGTGAACGATATGATTAAGCAAATAAATACGGATGAACAGAAGGATGAGAAGGAGCCGAAGAAGGAATTAAAGAGCGAAGAGGATACGGATGACGAATCGGCGACCGTAAACGAAACAGACGACTTTGAAGATGCCCCCGAGTTGTATAAGTGCGAAGTTTGTAGCCAATACTGTTCGTCGTTAAAGAACCTAAAGAGGCACGCTCTGGTACACGGAGACAAGAAGTACTCCTGCACCGTATGCAAAAAGTGGTTTTTTAGGCCGGACACATTGAAGAAACATGCGGAGAAGCACGGACACGGTTTACTCGATAACTTGGTGGacgataataaattattcgactccGACGATGATCCCTTCCCCAGTTCAGCGAATATGCCAGCAGCCGAAAGTGAGAACGtgaagagagaagagagcgaTGAAGATGGTTCGGGAGAGTACAAATGTCAACACTGTGACAAAGTAATGGCTACCAAGAAGGGTCTCAGGCGACACGTATCGATGCACAAGCCGAAAGCGGAACCGGTCACTTGTGAGATTTGTAGGAAGGTTTGTGCCAGTCAAGCGCGCCTCGTTCTTCACCAGAGAACGCACAAGCCGAAAGAAAAAGTGCCGCGCGAGTATCTGTGCCACATTTGTAGTAAGGTCTATCCGAGCAATTCCTCGCTTACCTATCACATGAGAACTCACACCGGAGTGAAGCCACACGTGTGTAAAACGTGCAACAGTGGATTTACGACGACTACTAGTTTGGCGAATCACATTCGCATTCATACCGGTGACAAGCCGTTCGTCTGCCATGTCTGCAGTGCCGCGTTCGCCGTTAGTTCAGCTTTCAGGCGACACCTCACGCGGCATACAGGCGAGGCAAACTATCTATGCAAGACGTGTGGCAAAGCATTTAAGAGACTCAGTACCTTAAAGGAGCATACGTACACGCACTCCGGTGAAAAACCCTACGTTTGTAAGACATGCGGCGCTGCCTACAGTCATAGCGGTAGTCTCTTTGCTCATCAGAAACGCTGTCGCGCCCAATACGGTGAGATGGTGGTGGATGATCATCATCATACCGTCGCTCATCACATTCACGTCAATAATGTGCAGTCTGCGGTCAGATCCCTGGCTGTAATAGGACAGATGTTTTAA
- Protein Sequence
- MNSGYFSLPLNMDRVCRICLSEGTNLSPIFCADQEVDDFSGLPQKIQICGSIDIHEQDGLPSLICDVCIYKASVAHEFRQQCQHSDVRLRMYYNKPAKCNVTDSCTQTEPESRIMLTPKLTASQDSYFIKEEMQVASSGQEFTQTTDSYSRSEPSLNDAQIDMQDDKLFMCTIGFEGSKEMEKESCVSQTDIHGTTVLEATSEVVTHAMSEVLPIGGNKEQDEQASLKDLEKGDREQADEFLDEHIQNDVTEEEEEDVVPQKRTSSRKAKPIPTKAYSEDDTDDNYYDPNNSDSQDSEELKFKCKICSKRYATQKGLKKHSLVHEKKHKCNICLKLFYKQENMEKHKKIHASKPHACQLCHACFSKPQSLVRHLKSHTEKVNDMIKQINTDEQKDEKEPKKELKSEEDTDDESATVNETDDFEDAPELYKCEVCSQYCSSLKNLKRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDPFPSSANMPAAESENVKREESDEDGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVVDDHHHTVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01255866;
- 90% Identity
- iTF_01255866;
- 80% Identity
- -