Cpra001823.1
Basic Information
- Insect
- Cryptocheilus praepositus
- Gene Symbol
- -
- Assembly
- GCA_033815515.1
- Location
- JAWWQZ010000032.1:821777-824729[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0008 0.088 13.8 1.6 2 23 325 346 324 346 0.97 2 11 0.00021 0.023 15.6 0.8 1 23 354 377 354 377 0.92 3 11 0.0017 0.18 12.8 1.1 1 23 430 452 430 452 0.98 4 11 6.2e-07 6.8e-05 23.6 1.5 2 23 501 522 500 522 0.97 5 11 1.4e-05 0.0016 19.3 1.2 1 23 527 550 527 550 0.95 6 11 4.4e-05 0.0049 17.7 0.2 1 23 588 610 588 610 0.97 7 11 8.6e-07 9.4e-05 23.1 0.9 1 23 620 642 620 642 0.96 8 11 2.4e-06 0.00027 21.7 1.2 1 23 648 670 648 670 0.99 9 11 1.2e-05 0.0013 19.5 0.2 1 23 676 698 676 698 0.98 10 11 9.2e-05 0.01 16.7 4.6 1 23 704 726 704 726 0.98 11 11 0.0012 0.13 13.2 0.3 1 21 732 752 732 753 0.93
Sequence Information
- Coding Sequence
- ATGGAAACATCGAAACACGAGGAGAGCGCTAAGAATCCCGAGGACGTTGAACGAATTTCCGGTGACGAGTGCCGCGTATGTTTACAGAGATGCAGCGAGACGTGTCAACTGTTTCAAAACGACGGGGGGATACCAGAGAAACTAATGGCTATCGCTGGTGTGCAGGTAGAAGAAGGGGACGGATTGCCTGGCATAATTTGTTCTTCGTGCTACAGGCTTCTTGACATGTCTTATGACTTCAAGTGTCAGGTACAGAGTTCAGATGTAAAGCTACGTCAAATTTTAAGTCTCAAGGCATCCACGAGGGACGATAAGGATTCATGCATAGAAAATCCCACCGTCGGCAGTGTTCTGTGTCAAGTGATAAACCCTGTAGAAACTGATTGTAGTGTTAAAGATGGAGTAAATTTGACAGAGGATATTACTGCCCCAGAAGCAAATCTGACTGCCGTCCAATCTAACATACAGCTCAATGTACAAACTTTTACAAAGGATCATAACGCATCAATTACAGAACTTGAACATAATCCTGAACAAGAGGTAAACGTAAAAGaaaccataataaaaaatacaggAGGAAGAAATGAAGATGTAGAAAGCAAATCTACCTCTGAACAATGCAGTGAAACCAATGTGTGTATAGATGATTTAGCTTTAGAAACAAGGGAATCATCTAGTTGGGTAACAGAAGTAAAATCTATTAAGCAAGAGGAACTCTCTTTACAAGATGAGGGTGAAATCTTGTGCAATGAAGATCCTTTAGGGGATCAAACTGCTATTCATAGAGAACAGATATTtaagattgaaataaaaaatgatataactcCGACGGATGATAATCTTCTAAAAGATCCTGATACAGATACATTCTCAGATTGCGCACCTAACGCATTGGACGATAATCAGGATTACAAACTGGGTAATTGCAGCGACGATGAAGAAAAACCATTAATATCAAGAGCTTCaagacaaaaatgtatgcactgTATCAAGACATTTGCAACAAAGTTGGCACTACAAAGGCACATGATTGTACATAAACACAAAACCAAATTACGCTATGTTTGTTACATATGCGACAAACAGTTTTCTAATATAGCCAAACTTAAAAACCATGTTTTTAACAACCATGAtaccaataaaaatgaagtaaaagaTTCAAGAGAAAGCCAAAAAGTAAATCAGAAAGATATGTCAGAGAAAAGGATGAACAAAACTGCTGTATCTCCTGATAAAACTTGTGATAATTCTCAGGACATgataaaaggagaaaaaaagaattttaaatacatgtGTCAAGTTTGTTCAAAGCAGTTCACATATCAAAAACCATTCTTGGCACATGCTAAGAGTCACCCAGAATACAAAACTAGAAGCCACAAAGTCAAAAACAAATCTTCTGTTCTAACAGAAAATGAatctgaagaagaagaagaaccgGAAGAAGAGGATGCTGAAGAAGAAGATGATTATGACAGCGATCTACCTATCGAAAGTTTACAATGCACGCAgtgtggaaaattatttgccaCAAAACGGAATCTCAAGAGGCACATTTCAACGCACAGTGGGCTTAAGTTTAATTGTTCGACCTGTGGGAAAGCATTCTCCAGACTAGACAAATTAAAGGACCACGAACAATCGAAGCATAAGGAGGATATGTTTGGCAATTCAGATGACGAAGCGGAAAATGATACGGACAACGAAAATAAAGTCGGCGACACATCGGAGAATCAGAAAAAGGACAGACGCAACAGGCCACACAAATGCGCCATGTGTCCAAAGGCATTTGCACAACCTCAATCACTGGCCAATCACGTGGAAAGGCACAAACGCGTGAAGGATACCCAGAAACGATTTTTATGCGAAGTTTGTAGCAAGTGCTTCGCTCAAAGTGGATCTCTAGTGGCTCACATGCGCACTCATACCGGCGTCAAGCCGTACGTCTGCAACGTATGCAGTCGGGCGTTTACGAAAAGCACATACTTGCAGTTGCATTTAAGAACTCATAGCGGGGAAAAACCGTACATATGCCAGTACTGTAGTAGGGCGTTTGCGAGAGCGAATACACTAGCTAGACACATCACGATGCACACAGGGGAAGCAAAGTACCATTgccaaatatgtacaaaatcctTTAGAAGATTAACTTCCCTGAATGAGCATACTTACACGCACACCGGTCAGCGACCTTATGCATGTAAAATCTGTACAAAACGATACAATAACGCGGGCTCCTTGTATGCTCATTCGAAAAAGTGTAAAGCACAACAGTTACCCGTCTCCACGGCTGCGTTTTCTGTTTCGATAGAGAATTCGTCGCAACAAAACGGTCCTATGCCTCATGTACTGATATATTCCCAAAGAAAATTAATGGAGGACGCTACCGTTGGCCAAGTCACTCCGACGCCGCAATACATGCTCGCAAATGTACATAATCAAAAGACATTACCGACCAATGTAATACAGCCGTTCACAGTTGACGATCCGAATGTATATACAGTtaattcgaaacaatttaagAATCCCTATTATGCCATTTATCCAGACATGTAA
- Protein Sequence
- METSKHEESAKNPEDVERISGDECRVCLQRCSETCQLFQNDGGIPEKLMAIAGVQVEEGDGLPGIICSSCYRLLDMSYDFKCQVQSSDVKLRQILSLKASTRDDKDSCIENPTVGSVLCQVINPVETDCSVKDGVNLTEDITAPEANLTAVQSNIQLNVQTFTKDHNASITELEHNPEQEVNVKETIIKNTGGRNEDVESKSTSEQCSETNVCIDDLALETRESSSWVTEVKSIKQEELSLQDEGEILCNEDPLGDQTAIHREQIFKIEIKNDITPTDDNLLKDPDTDTFSDCAPNALDDNQDYKLGNCSDDEEKPLISRASRQKCMHCIKTFATKLALQRHMIVHKHKTKLRYVCYICDKQFSNIAKLKNHVFNNHDTNKNEVKDSRESQKVNQKDMSEKRMNKTAVSPDKTCDNSQDMIKGEKKNFKYMCQVCSKQFTYQKPFLAHAKSHPEYKTRSHKVKNKSSVLTENESEEEEEPEEEDAEEEDDYDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKAFSRLDKLKDHEQSKHKEDMFGNSDDEAENDTDNENKVGDTSENQKKDRRNRPHKCAMCPKAFAQPQSLANHVERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHSKKCKAQQLPVSTAAFSVSIENSSQQNGPMPHVLIYSQRKLMEDATVGQVTPTPQYMLANVHNQKTLPTNVIQPFTVDDPNVYTVNSKQFKNPYYAIYPDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01255861;
- 90% Identity
- -
- 80% Identity
- -