Cpra004087.1
Basic Information
- Insect
- Cryptocheilus praepositus
- Gene Symbol
- -
- Assembly
- GCA_033815515.1
- Location
- JAWWQZ010000084.1:25345-26940[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.9e-09 3.2e-06 27.2 0.0 4 39 13 48 12 54 0.92 2 3 4.8 8e+03 -2.9 0.0 23 28 299 304 298 304 0.89 3 3 8.7 1.5e+04 -3.7 0.1 25 32 436 443 434 443 0.88
Sequence Information
- Coding Sequence
- atggcaaaacgacaATATAACAAATGGCGTATGCAAGATATGAATGCTGCGATAGAAGATtataataatggaaaattacGTTTCAATGAAGTATGCAGGACATATGGTATTCCAAAACCAACGTTTAGACGTCATTTAACAGGTCTAAATACTCAGAAAAAAAtggggagaccaaaggatttacCTGAGCAAATAGAAACTGAATTGAAACACCATATTTTGAATTTGGAATCTAGATTCTTTGGTTTAACTATCAAAGATTTAAGGCATCTCGCATTTCAGTTGGCTGAAAAATACAAACTTCCGCATCGATTTAATAAGGTGCAAGAGTTAGCCGGTTGGAAATGGTATtacaaattcatgaaaaacCATCCAAAAATTGCCTTAAGAACACCTGAACCAACATCAATGGCACGATGTAAAggatttaataaaaagaatgtatcagaatttttcgataaatacGAAGAGATTCTGGATAATTTCGAATTTGGCCCTAACGAAATTTTTAACATGGACGAGACAGGCCTTAATACCGTTCATAAACCTGGTAGAATATTAGCGTTGAAAGGAAAACATCAAGTCGGAGCTATCACTAGCGGAGAACGCGGAATTAATACTACATGCATTTGTTGCATGAATGCCACGGGAGATTTCATTACACCAATGCTGATATTTAAACGCAAAAGAATGACGGACGCCCTTAAACGTGGTGGGCCGCCTAATACGGTGTACACTTGTTCGGACAGCGGGTGGATTGTGGCTTCAATCTTTGTCGAATGGTTACAACACTTCATAAACcatttaaaattagaaaaacaGTCGAATCATAAAATACTATTGATACTTGATGGACATACCGCACATACTAAAAATCTAGAAGCCATAAACCTAGCTAGAGAATACGGTATTCTAATGCTTTCTTTGCCGGCGCATACTACACACAAACTACAGCCATTAGATAGATCTTTCTATAAGTCTTTAAAAAGCAATTTCAACAAAGAGTGTTCAACTTGGATGAGAAATCACCCTGGTGCAACAATCATGCAATCAAACATATCTGAAATTTTGGAATTGGCATATCCTAAATCGGTTTGTATGGACATCGCCATGAAAGGTTTTGAAGCTTGTGGACTATGGCCTTGCAATAAGCATAAAATACCAGATGAAGAATATGTAATGCTTGATGAAGAAGATGAAATAGCTCCAATTAGTGCGCAACTTTCGTATCCTGATCCTTCCGAAACGAATCAAACTGCCCAAGCTGACACACCAATTCGTGATGATATAGAGAATTTATCACCAATTTATCAAATTCCCGCTCGAACATCTAAAAGAACCTCAAAAACTGTACTACTAACTTCGAGTCCTCATAAGAGTAGTTtggagaataaaataaatgaacaaaaaaaaccAAAGAAGCCAAGGAGACAACCTGAACAAAGTACTTCTTGGTATTGCATTTTATGTAGCAGAAATGAGAAGAAATCCATGATTCAATGCATCAATTGTATGGTATGGGTGCACGATAACTGTGCAGGTGTAGGAAACGCTACATATTCCTACACTTGCGAAAATTGCAGAAGTACGATTTAG
- Protein Sequence
- MAKRQYNKWRMQDMNAAIEDYNNGKLRFNEVCRTYGIPKPTFRRHLTGLNTQKKMGRPKDLPEQIETELKHHILNLESRFFGLTIKDLRHLAFQLAEKYKLPHRFNKVQELAGWKWYYKFMKNHPKIALRTPEPTSMARCKGFNKKNVSEFFDKYEEILDNFEFGPNEIFNMDETGLNTVHKPGRILALKGKHQVGAITSGERGINTTCICCMNATGDFITPMLIFKRKRMTDALKRGGPPNTVYTCSDSGWIVASIFVEWLQHFINHLKLEKQSNHKILLILDGHTAHTKNLEAINLAREYGILMLSLPAHTTHKLQPLDRSFYKSLKSNFNKECSTWMRNHPGATIMQSNISEILELAYPKSVCMDIAMKGFEACGLWPCNKHKIPDEEYVMLDEEDEIAPISAQLSYPDPSETNQTAQADTPIRDDIENLSPIYQIPARTSKRTSKTVLLTSSPHKSSLENKINEQKKPKKPRRQPEQSTSWYCILCSRNEKKSMIQCINCMVWVHDNCAGVGNATYSYTCENCRSTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -