Cpra005301.1
Basic Information
- Insect
- Cryptocheilus praepositus
- Gene Symbol
- -
- Assembly
- GCA_033815515.1
- Location
- JAWWQZ010000123.1:99234-99848[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.2e-12 1.4e-08 34.8 0.0 1 39 10 48 10 51 0.96 2 2 0.53 8.9e+02 0.2 0.0 21 30 94 103 93 104 0.88
Sequence Information
- Coding Sequence
- ATGTCAAAGCGGGTTTATAATCGTTGGAAAAATGAAGATATGGAAGAGGCGTTAACCAAATTATCGAAAGGTGTTATTGGATTTAATGAAGCTCATAGAAAATATGGGATTCCAAAACCAACGCTAAGACGTCATTTTAAAGGATTAAATAAGATCGTTAAATTTGGAAGGCCTAAGGATTTGAGTAGTACTATGGAACAGGAGTTAGTTCCGCACGTACTCAAGTTAGAAGCAAGCTTTTTTGGGCTTACTGCAACTGATCTAAGAAAACTTGCCTATCAACTcgctgaaaaatataatttaccacACCGTTTTAacagagaaaaagaaattgcaGGGAAGAAGTGGTACTATAAATTTATGAAAGATAATCCTTGCTTATCCTTACGTACTCCAGAAGCAACATCAATGGCCAGGGCTAAAGCATTCAATAAAGAACTagtttataaattctttgataaatATGAATCTATATTAGATGAATATAGTTTCACTGCAAACCAGATTTATAATGTCGATGAAACAGGATTATCCACCGTTCACAAACCATCTAAAATAATTGCTCAAAAAGGTAAACATCAAGTTGGGGCAATTACAAGTGGTGAAAGGGCTTGA
- Protein Sequence
- MSKRVYNRWKNEDMEEALTKLSKGVIGFNEAHRKYGIPKPTLRRHFKGLNKIVKFGRPKDLSSTMEQELVPHVLKLEASFFGLTATDLRKLAYQLAEKYNLPHRFNREKEIAGKKWYYKFMKDNPCLSLRTPEATSMARAKAFNKELVYKFFDKYESILDEYSFTANQIYNVDETGLSTVHKPSKIIAQKGKHQVGAITSGERA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00066175;
- 90% Identity
- -
- 80% Identity
- -