Cpri006701.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- nfxl1_1
- Assembly
- GCA_963576515.1
- Location
- OY754940.1:9793507-9805168[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 2e+04 -7.8 5.6 15 19 165 169 164 169 0.81 2 20 0.13 1.3e+03 -0.3 0.4 4 10 200 206 199 206 0.95 3 20 3e-08 0.00031 20.9 17.0 1 19 214 231 214 231 0.99 4 20 1.2e-08 0.00012 22.1 18.3 1 19 267 285 267 285 0.98 5 20 0.82 8.4e+03 -2.9 1.2 6 10 310 314 309 314 0.90 6 20 3.5e-09 3.6e-05 23.9 14.0 1 18 320 337 320 338 0.95 7 20 0.84 8.6e+03 -2.9 0.9 6 10 363 367 362 367 0.86 8 20 8.6e-05 0.88 9.9 12.3 1 18 373 390 373 391 0.96 9 20 0.3 3e+03 -1.5 0.5 1 4 400 403 400 404 0.89 10 20 0.00039 4 7.7 16.1 1 18 425 442 425 443 0.94 11 20 8.9e-11 9.1e-07 29.0 13.1 1 18 452 469 452 470 0.97 12 20 0.59 6.1e+03 -2.4 1.0 5 10 498 503 498 503 0.94 13 20 0.00013 1.3 9.3 6.3 9 19 518 528 516 528 0.91 14 20 0.12 1.2e+03 -0.2 5.9 4 12 540 548 538 548 0.86 15 20 1.3 1.3e+04 -3.5 3.4 14 19 576 581 576 581 0.87 16 20 1.3 1.3e+04 -3.5 1.0 6 10 607 611 606 611 0.83 17 20 6.9e-05 0.71 10.1 4.1 1 11 617 627 617 628 0.97 18 20 9.3e-06 0.095 12.9 19.4 3 19 658 674 657 674 0.94 19 20 5.4e-06 0.056 13.7 10.9 1 16 717 731 717 737 0.92 20 20 1.9 2e+04 -4.1 1.2 6 10 767 771 766 771 0.86
Sequence Information
- Coding Sequence
- ATGCACAGTCGCTCGAAACCACCTAACCCTTGGAACAAAAGCCAACCATCTAAGAAATCAAAACCTAATATTGCAAACAATAATCATCTGCCAACACCCTCAGAACTAAAATTTAAGGAGACTCAATTGAAGCTTCAGGCAGCAGTTAAGAAGCATGTCGAGGAGTATGAATCCTCCTCGGATGAAGAGGAACTTGATTCCACAAGTCTAATAGataacgtgtttcaaaattataaatttgctGAAAAAGAACCTGAGCAGACAAGTCGAACTCATGGATTCATTGAACAGGCTTTACAGTCTGGGGCAGCTGCTTGCCTGATTTGCATTTCCAAAGTTAAACGGGATGATCAGATCTGGAGCTGCAAGAACTGTTATGGCTTTTTTCATCTGATGTGCATCCAGAGATGGTCCAAAGATACTATTGTACAACAGAAACAAGCCTTAGAAGATCAGATATTGGTGAAACAATCACTTAAAATATCGTGGTGTTGTCCTAAATGCCGAAATGAATACAGCCAGGAAGATATCCCCACGAAATATCTGTGTTTTTGCAAAAAGACAGAAAATCCTAAACATCAGCTGTATGTTGTACCACATTCTTGTGGGGAGATTTGTAAGAAGGATTTGGTACCAAATTGTGGACATAAGTGTCTCTTACTTTGTCATCCAGGGCCCTGCCCTCCGTGCCCTGTGATCGTGTCTGTGACCTGCTACTGCACCAAACAGTCTCCCAAAACTCAAAGGTGCAGTAATAAGGAATGGTCCTGTGGTACCCGTTGTGGTAAGACTTTGGAATGTGGGAAGCACACATGTCCAGACCCTTGTCATCCTGGCCAGTGTAAACCTTGCTCAAAGAAAAGTATCCAAAAGTGCATTTGTAAAGCGGAGCAGAAGTTAAGGGACTGTGCTACGCCTGTATGGCAATGTGAGAGGaTCTGTAATAAACTTTTGGACTGCAATAACCATAAATGCCAAAAGGTATGTCATAGCGGAGACTGTGGACCCTGCGAATTTACGGATCCGCGAACCTGCCCTTGCGGAAAGTCGTCTTATCTACTGCCTTGCACTGAAGAGACACCTAGTTGTCAAGATACATGTGATAAGCTATTGGAATGCGGTCTCCATACCTGTGGACAGAGATGTCACAAGGAGAAATGTGGACTGtgtttGGAAACTGTAGAAAAATTGTGTCGTTGCGGACAACATTCCAAAGAGGTTCAGTGCTTTAAGGATTATTTTTGTGAGGTAAAATGTAAGAGAATGAAGGATTGCAACAGACATCCCTGCAACAGAAAGTGTTGCAATGGGATGTGTCCACCTTGTGAGAAACCTTGTGGTCGAACCCTAAAGTGCGGTAATCACAAATGCAACTCCGTTTGTCACCGAGGTCCCTGTTATCCTTGCAATCAAACAGATACCGTAACATGTAGATGTGGAGCGACTAAGATTGTAGTACCTTGTGGAAGAAAACATAAGACGAAACCTCCTAAATGTAACAAGCTGTGTTTGATTCCCCCAGACTGCCACCATGACAAAAGACAGGATCATAAATGCCACTTTGGTGATTGTCCGCCCTGCAAACAGATCTGCAATAAGAGTAGACCTCATTGTACGCATCTTTGTCCAGCAACTTGCCATTCGGCGATTTTTGTGAAGGTGGAAGGTCAGAAAGCTTCCATGCCTTGGGAACAGACTAAGCCGCAAATAGAGAAAAGAGCATTGCCTTGTCCCGAGTGTACTGTACCTGTTCCAGTTACTTGCTTAGGTGGACACGAAACTTCTAATTGGGCGTGCTATCTTGCAAAACCAACAAGTTGCCAACGCTCATGTGGACGTCTTTTGCCTTGCAGCAATCACAAATGTTCTTTACCTTGTCATTTAGTTGAAAATTCTCCTGATGAAATATCGGCAGGGTCCAATTGTGAGGAATGCGAAGGAAGTTGCAACAAAGAGAGACCAGAAGGGTGTCAGCATCTCTGCCCAAAACCATGTCACCCTGGACCTTGCCCCCCTTGCAAACAAATGATCCGGATAAAATGTCATTGTGGCCTCAATCAACCCTATGTGAGATGTAGCGATTGGCTGATTTTGGAGAAGAGGGAAGAGTTGCAAAGTTGCGGGAATCAGTGCCCcaaaatgTATGACTGTGGTCATCGCTGCAAGTCAAATTGTCATTCCGGCCTTTGCCCGAACCCGGACTTGTGCaagaagaaagtaaaaataacatGTAAGTGCAAGAGAATCAAAAAGGAATTTCCTTGTGAACTGGTTAGGAAGAACCAAGCAATTGTCGAGTGCGATGAGACGTGCCTTAAGAAAAAAGAGGAATCGAAGAAACTCAGAGAAGTTCAAGAGGAGCAGAAAAGGAAAGAGGAAGAGATCAGGAACAGAAAGGAATTAGAGAAATATCAGAAAATGTTCGAAGGGAAGAAGAGGAATAAAGAGAGGAGAATTcacgaagaagaagaggaagacgGCTTTGTTAAAAAGTATAGATTTATAGGATTGACAGTACTGCTATTAGCTGTTGTGATAGGAATATATGTTACATGTTACTAA
- Protein Sequence
- MHSRSKPPNPWNKSQPSKKSKPNIANNNHLPTPSELKFKETQLKLQAAVKKHVEEYESSSDEEELDSTSLIDNVFQNYKFAEKEPEQTSRTHGFIEQALQSGAAACLICISKVKRDDQIWSCKNCYGFFHLMCIQRWSKDTIVQQKQALEDQILVKQSLKISWCCPKCRNEYSQEDIPTKYLCFCKKTENPKHQLYVVPHSCGEICKKDLVPNCGHKCLLLCHPGPCPPCPVIVSVTCYCTKQSPKTQRCSNKEWSCGTRCGKTLECGKHTCPDPCHPGQCKPCSKKSIQKCICKAEQKLRDCATPVWQCERICNKLLDCNNHKCQKVCHSGDCGPCEFTDPRTCPCGKSSYLLPCTEETPSCQDTCDKLLECGLHTCGQRCHKEKCGLCLETVEKLCRCGQHSKEVQCFKDYFCEVKCKRMKDCNRHPCNRKCCNGMCPPCEKPCGRTLKCGNHKCNSVCHRGPCYPCNQTDTVTCRCGATKIVVPCGRKHKTKPPKCNKLCLIPPDCHHDKRQDHKCHFGDCPPCKQICNKSRPHCTHLCPATCHSAIFVKVEGQKASMPWEQTKPQIEKRALPCPECTVPVPVTCLGGHETSNWACYLAKPTSCQRSCGRLLPCSNHKCSLPCHLVENSPDEISAGSNCEECEGSCNKERPEGCQHLCPKPCHPGPCPPCKQMIRIKCHCGLNQPYVRCSDWLILEKREELQSCGNQCPKMYDCGHRCKSNCHSGLCPNPDLCKKKVKITCKCKRIKKEFPCELVRKNQAIVECDETCLKKKEESKKLREVQEEQKRKEEEIRNRKELEKYQKMFEGKKRNKERRIHEEEEEDGFVKKYRFIGLTVLLLAVVIGIYVTCY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -