Cpri017621.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754954.1:6659145-6661613[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0035 0.2 12.3 1.5 3 20 251 268 250 270 0.94 2 14 0.0073 0.42 11.4 0.3 2 21 294 313 293 314 0.93 3 14 7.5 4.4e+02 1.9 1.3 1 23 318 340 318 340 0.91 4 14 1.3 74 4.3 3.4 1 19 346 364 346 367 0.95 5 14 3.3 1.9e+02 3.0 1.8 1 21 364 386 364 387 0.88 6 14 0.15 8.4 7.3 0.9 3 21 422 441 421 442 0.90 7 14 0.096 5.6 7.8 1.6 3 23 451 470 450 470 0.98 8 14 0.00067 0.039 14.6 2.4 1 23 477 500 477 500 0.98 9 14 0.84 49 4.9 0.1 2 23 506 527 505 527 0.88 10 14 0.0018 0.1 13.3 0.5 2 23 535 558 534 558 0.96 11 14 0.28 16 6.4 0.4 2 23 578 599 577 599 0.94 12 14 0.32 18 6.2 5.1 1 23 605 628 605 628 0.97 13 14 0.011 0.63 10.8 0.3 1 23 635 658 635 658 0.97 14 14 5.3e-06 0.00031 21.2 0.9 1 23 663 686 663 686 0.97
Sequence Information
- Coding Sequence
- ATGGTTACTCCGGGCGAGTCCGTGGACACAAAAATGGCTACTGAACCAAACACTTATTTTATCTCAGGTGACACGTTTTGTAGTTGTTGCTTCACGAGAGACGCCAGACTGTTGAAGTTTAAACTTGGCGACAAGTGCTTCGAGAACGTATCCGCGAAAGACGCCATACTGAAGATCTTACCGTATATCGATTTCCCATTAATGGACACCGATGCTATATGTAACAGGTGTTTTGAGGTCTTGATGAAAACTTTACGATTCATCAAGACGTTCATGGATGTGAATTCTTGCCGCCTGACACGGTCGGAGAGTCAAAATAGAGCCGTCGAGGGGATTACTGTAGATTCCAACAGCATTCAGAACGCTGTGGAAGACGATGTAGATGAAAATCAAAGCGTCTCCAAGGAAGACGTAGTTGAACCAACCCataggaaaaataatgatgattcgtttaaaatcgaatttgtaGTCGAGGACGAGGGGGCTCTTAGCGAGGAAGAACGGTATTTCGACGAAGTCAGTTGCTATTGCGCCACAAAGACAATGTACAAAACGGCGGATCATCGGGTGTTTAAGGAGAGCGAAGCAGAACCGTTTGATAAAATGATAGTCATTCCAAATGCACGTGAGACTCTACTACATCATTTACTTTTTGACATCTACAAAGACATCGCGGTATTTCAACACTCATCGGCATGTCAAGATGAAAACAAAAGGTTGTTACTGCTTGGTAACGTCCATTACAAATTCTGTTCCTCATGTGAGAAACATTTTGCAACGCAAGATGAGTTCAAGCAACATATGACGCAGGAGAAGTGTAGGTCCAACGAACAGAACtccattgaatattttttcaaaactccCAGTCTCACTTCTTTGAAGTGCGACGTCTGCGGGGCGTCATTTGGTCGACTGAACCACAAGAGAGCTCACATGACGAAGTGTGTTATGTTCGAGTGTTTCTACTGCAAGGCGAAACTAAATGGGAACCAACTCTTCGAACATTCTAGAACCTTACATAACGACTCAAGGCCGTTTAAGTGTGGTAAATGCACAAGCGCATTTCGATCATATAAAAAGTACAAAGAACACAACTGTGACAAGATCATGTGCGAGAAGTGCGGCAGGATACCAGCCTCTCTTCAAACACACCAGTGCGGTTCACCGACCAGGTCGAAATCGGTTACCCGTAAGTGCTGTCATTGCGATGAGTATATCGTGATGTCTGAATACAAACAGCACATACGCCTCAAACACAGGGTTTGTTACTGCGAGTGCAAACGAAGTTTTTTCACCATGGAAGAATTGGAGGCGCACAAGAATTCGAGTTGTCCAGCCATGAAGCAGCTGTGTAACATTTGCGGCAGGCTCTTCGCCAAGGGACACATGCGGCAACACCTGAAAATTCACGAGCAACGCGTAAGATCCTTTGAGTGCGAAACTtgcaacagaaaatattttacatcgGCGCGGTTAAGGGATCATATGAAAAAGTCGCACTTTGGTAAAGAAGTCATGTGCGAGTACTGCGGTATCACACTCCGGGAGTACAGCATGAAAGGGCACATACTTCTCAAGCACAACCAATCGATCCATAAGTTAAAGTGTCCGATGCCGAACTGTGGGAAATTATTCTTGAGGAGAGATTATTTAAACAGGCACATCACGAGACACCAGAGAGGCCTGCGCCAGTTCTCACTGCGCAGGACGCCCTTCGGTGACCGGATGGTCACCTGTAAGTTCTGCCTGAAGGAATTCAAAGGCTTACCCAGGCTTAAAGTGCACCTCGTCAACCACTTGCGCCTCTCGCGGTATAAGTGCAGGTTCTGTACGATGACGTATACGAGCTACAACAACCGGCTGAGACATGAGAAGAAGTTCCACAAAAAGGCCGAAGAGGGCTTCCGGTGCAACACCTGCTGGAAAAGGGAGCCGACCAAGGAGAAACTGAACGTTCACATCGAGACCGTGCACAAAAAGAAGAAGTACAAATGCGAGAATTGTGGGGAGGCGTTCTCCCGTCACTTTCAGCTGAACACGCACCTCATCGTAGAGCACGTCAAGCCGTTCGAGATCGAGGAGGAGAGGAATTACATATTCCACGAGGCACTGTCGGAATACATAAAGTTCGAGGAGAATGGTACGCAAATCGAAAGCCCTCTCACACCCCATAATCACATAGAATATGAAGTGGAGAGCAATAAATCGGCGGGCGAGGAATATACGGACGAGGACATAATTGACGAAAGTATGTATAGATTGATTAAAGTTGAGGAGCATTACACTGTGCCTAACAATAGTGAACAGGTGAACCGTTTCCAAGTCAAAAATGAAGATGAGGAAAGTAATTAG
- Protein Sequence
- MVTPGESVDTKMATEPNTYFISGDTFCSCCFTRDARLLKFKLGDKCFENVSAKDAILKILPYIDFPLMDTDAICNRCFEVLMKTLRFIKTFMDVNSCRLTRSESQNRAVEGITVDSNSIQNAVEDDVDENQSVSKEDVVEPTHRKNNDDSFKIEFVVEDEGALSEEERYFDEVSCYCATKTMYKTADHRVFKESEAEPFDKMIVIPNARETLLHHLLFDIYKDIAVFQHSSACQDENKRLLLLGNVHYKFCSSCEKHFATQDEFKQHMTQEKCRSNEQNSIEYFFKTPSLTSLKCDVCGASFGRLNHKRAHMTKCVMFECFYCKAKLNGNQLFEHSRTLHNDSRPFKCGKCTSAFRSYKKYKEHNCDKIMCEKCGRIPASLQTHQCGSPTRSKSVTRKCCHCDEYIVMSEYKQHIRLKHRVCYCECKRSFFTMEELEAHKNSSCPAMKQLCNICGRLFAKGHMRQHLKIHEQRVRSFECETCNRKYFTSARLRDHMKKSHFGKEVMCEYCGITLREYSMKGHILLKHNQSIHKLKCPMPNCGKLFLRRDYLNRHITRHQRGLRQFSLRRTPFGDRMVTCKFCLKEFKGLPRLKVHLVNHLRLSRYKCRFCTMTYTSYNNRLRHEKKFHKKAEEGFRCNTCWKREPTKEKLNVHIETVHKKKKYKCENCGEAFSRHFQLNTHLIVEHVKPFEIEEERNYIFHEALSEYIKFEENGTQIESPLTPHNHIEYEVESNKSAGEEYTDEDIIDESMYRLIKVEEHYTVPNNSEQVNRFQVKNEDEESN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -