Basic Information

Insect: Cryptocephalus primarius
Gene Symbol: -
Assembly: GCA_963576515.1
Location: OY754938.1:21085071-21090083[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0029 0.17 12.6 0.1 1 23 318 341 318 341 0.97

2 15 0.64 37 5.2 0.7 1 20 347 366 347 368 0.92

3 15 0.085 4.9 8.0 3.1 1 23 433 457 433 457 0.97

4 15 0.00041 0.024 15.3 4.5 1 23 460 483 460 483 0.97

5 15 0.018 1 10.1 2.1 2 23 490 512 489 512 0.95

6 15 0.0011 0.066 13.9 3.5 1 21 572 592 572 593 0.95

7 15 0.00068 0.039 14.6 1.4 2 23 605 627 604 627 0.92

8 15 0.58 33 5.4 1.8 1 23 630 653 630 653 0.96

9 15 1.7 1e+02 3.9 1.2 3 23 660 680 658 680 0.95

10 15 0.041 2.4 9.0 0.3 1 23 684 707 684 707 0.96

11 15 3.2 1.9e+02 3.0 0.4 2 23 714 736 713 736 0.89

12 15 0.044 2.6 8.9 0.5 2 23 745 767 744 767 0.94

13 15 0.18 10 7.0 0.1 3 19 774 790 773 790 0.97

14 15 1.6 90 4.0 0.2 2 23 915 937 914 937 0.92

15 15 0.49 28 5.6 0.9 1 23 950 972 950 972 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0029	0.17	12.6	0.1	1	23	318	341	318	341	0.97
2	15	0.64	37	5.2	0.7	1	20	347	366	347	368	0.92
3	15	0.085	4.9	8.0	3.1	1	23	433	457	433	457	0.97
4	15	0.00041	0.024	15.3	4.5	1	23	460	483	460	483	0.97
5	15	0.018	1	10.1	2.1	2	23	490	512	489	512	0.95
6	15	0.0011	0.066	13.9	3.5	1	21	572	592	572	593	0.95
7	15	0.00068	0.039	14.6	1.4	2	23	605	627	604	627	0.92
8	15	0.58	33	5.4	1.8	1	23	630	653	630	653	0.96
9	15	1.7	1e+02	3.9	1.2	3	23	660	680	658	680	0.95
10	15	0.041	2.4	9.0	0.3	1	23	684	707	684	707	0.96
11	15	3.2	1.9e+02	3.0	0.4	2	23	714	736	713	736	0.89
12	15	0.044	2.6	8.9	0.5	2	23	745	767	744	767	0.94
13	15	0.18	10	7.0	0.1	3	19	774	790	773	790	0.97
14	15	1.6	90	4.0	0.2	2	23	915	937	914	937	0.92
15	15	0.49	28	5.6	0.9	1	23	950	972	950	972	0.95

Sequence Information

Coding Sequence: ATGGAGACCAAACTTTGCCGGATTTGCGGTAAGCCGGGACAGAATTTCGTGAATATTTTCAACGCGGAAGGTCTTAAGACGAAGATAGAGACTTGCCTCCCAATAATAgtaaCTCCCTactgtctgttgccagacactatttgcaataagtgcaaggaagacatagACAACTACCACAGCTTTATCAAAGAATGTCTTcaaaacatcatcattctggaagcACAGTACAACATCCAAGACTCATGCCTGAAATCGAAACAGCGTCGAGACAAAGGTTGCCTGACGGATTTCGCTCACGTGAAAAGCAACAAGAGCATACAGACAGAAGACTATCTAGACGTGCTGTCTGGGAACGACCTCAAACTCTTCCGAGAGGAGTTCCCCCTGAtgacaaattttttacataaaagtcGTAATGATGTTTCTCTGGTAGATTACGAAGACACGAGCTCTGAGTGTACAGAAAAGGTGTCAGATTCTGTGATAACTTTTGATGAGTCTCGTTTGGATAAATATCGTGATAATATTATTAAGGAAATCTCGCAACGGAAGGCATTAAAGAGAAAAAGCGATACCATACATCAttctcaaactaaaatttgcaaattagaTTCCGTCAATAAACGTAAAAGTAAGACGCCGAAGAGGatcaattatttcaactcggaagatggaagctttgaaaagagcacCGTGGATAACAACCAGATGCCAttgtttccaaattattttgcCTATGATGTCGCTTTTCCTGGCATGGAAGCTTTAACaaatcatgttctggaagcccATGGGACCGATATGACTGAGGCTGTATCGTCTGGTTCGGATAAGAGCaagaaaaagatgcccagtcttgtcAAAATATCTGACCTTAAACGGTCTGATTCTGTCGATGATAATCAGTTTCTGGACTATCAAATAGAAGACCCTCCTGCTTTACTCCCGACCTTCGTGTGTTCGAACTGCCCGGCTATCTTCACTATCAAGTCTGATTTGGGTCTTCACATCCGGAATGAACACTCCCACATAGCAGCTTATTTATGTGGACTCTGCTCGCAACAGTGTAACTCCTACATGAATCTCAAAACTCACTTAGAAGCCTGTTCCCAGAAGTGCCCGTCGGACAAAAGGTATATCTGCCAGGTTTGTTATTATGGTGAAGATAATTTCAGGTCCCTTGAAAATCACGTCTTGATCCATGACTTTTTGATTGAATCTTGTAAGAAGCAACTGAAGATCTTCGACCCTGCTGATTATGTGGATATTAATAAGAATCTAGAGAACAGAAAGAGTTTTACTTGTAATAAATGTGGTTCGAATAAATTCAAATCATTTAAGGAGTTCAGTGCTCACAGAAGAACAGAACATTCAATCTATCATTGTGATTTATGCAATAAATTCTATGGGCGCAACTCGCATTTATGGAAGCATGTCAATCGGCTCCATAAAGGCCATCCTAGTATTACCTGTCAACTGTGTTACAAAACATCCGCTTCTAAGTATCACTTGGCGCAACACTTCAATAAAATTCACTTCGCGAAGAGGAAACTTCAGTACTTTGACTTTAAACCAGTGACAAGCATTTGGAACGACCAAGAAGATCCTGACTTGAAAGATGATACACTCGCAGCACCTAAAGAAATCGACTCTACCCATAACCTCTACACTAATATCATAACAAATTACACTCCGCCATCAAACGAAGGCGACTTTAAGTGCCCAAAGTGCTCAAAAGCCTTCCACAAAAAAGTACTATTGAAGAAACACAAGAAGAACTGTCGTCCGAAGATGCAGAAAGATCTTTTAACCCGCTGCAAGACTTGCTCTAGAGTGTTCAAAGACCGTCAAAGCCTAGCCAAGCATTTGGTTAACTACCATTCCGAATACACCTGCGAAATTTGCTCTCAAAAGGTGCAGAGCAAGTGCGAAATAGTTTCGCACATTAGGTTCCAGCACCCTGGCTGTAATTTATTCTGTAGGATGTGCAAGAACATACTGAGGAACCACGAGGACATGGAAGAGCACATCCGTGACCATTCATCTTCATACATCTGTCAATTCTGTGGGGATTCGCTctcaagtaaaattaaattgaaaatgcaCATCCTGAGTCTGCACAGAAAGATCTTGAGCCTGTCCTGTGGCATTTGCCTGAAACTCTTCGAGAACCAGCACATTTTAAAAGACCACGTCACGTTAGTCCACAAAGAGCAGCTGGCGCCCTTCACTTCTTGCCCAGTTTGTGGTAAAAATTACGGCTCAAAATGGAAGACATACGATCATTTGAATAAATCTCATGGTATGATTTTTAAGGCGTGCAAAACTTGTTTGGAAGTGTTCAACAGTGAGGCTCAGCTGCAAGCTCATTGCGACGCTACAAATCACGGCGCTCAGAACGCCAGCCTGctcaaaaacagttttaattctgagataaaagaagaaaatgaagaagagACCTCCTCTGAAGAATTAGAAGGGAACAGCGAGGAAAGTAGCGAGGATGAAAGTGACAAAGATAGATTTTCCCTGTCGTTGTTAGGAAAGAACTCGAATAAATGTGTTAGTAAGAAGGTGTCAAAGGAATCAAACATGGATTCGGTTCAGGGTAACTCATCTAAACGTACAGTGTATGTCAATAGCAATGATCCGTCTTGTTGTGAGATATGTTTCAAAACTTGGCCAGCCAAGAAGCATTTATGGCAACATTATATACGTTGTCATAAGAAAGTGGCTGCGACAGTTTGCGGAATTTGCCTAAAAACGAATGATACGTACGAAGCATTACAGGTACACCTAAAACAAACTCATCCCACATTGCTACACGGTCAAGGCTTCGGTTCAAATTTTATATGCCGGATATGCGGCCGGTATCATAACGCCAGCTCCAAACTACGTCTGCACATGGTAATACATGAGGATTTCGACTGGGAGTTGTTGGATGGTACAAAGGACGAGAAAAAGAAAGATGAAGACAATGCGATTAATTATGATAGTATGATAGAGCAAATCGTATGCTCCGATAACGAGGAAGCTGAGAGGAAATGTGATAAAAGCAATGAAGAGGAAGTGGACGATTCTTCTTCCGATCAAGAAAGCGAAGACTCTTTACCATTCAATGCCGAAACGAAAGAGGACGGTGATTCCTCCACGGAATCTACTTCGACTTACTCAGAGGATTCGAGTGAAGATTCCCATTTTCAGAATTCGGACTCGATGATGAACGGTGGCGTTTTCAGGGAAGTCGACAGCGATAAAAAGTCTTCGAGTAACGAAGGTGCCGATGAGAAAAATCCTACTACAGAATATTGTGATCTGCAGAATGAGAATGAAATAGAGTCCGCTGTCGGAAGCATACAGAATTATTTCAAGTCTGAATGTTAA
Protein Sequence: METKLCRICGKPGQNFVNIFNAEGLKTKIETCLPIIVTPYCLLPDTICNKCKEDIDNYHSFIKECLQNIIILEAQYNIQDSCLKSKQRRDKGCLTDFAHVKSNKSIQTEDYLDVLSGNDLKLFREEFPLMTNFLHKSRNDVSLVDYEDTSSECTEKVSDSVITFDESRLDKYRDNIIKEISQRKALKRKSDTIHHSQTKICKLDSVNKRKSKTPKRINYFNSEDGSFEKSTVDNNQMPLFPNYFAYDVAFPGMEALTNHVLEAHGTDMTEAVSSGSDKSKKKMPSLVKISDLKRSDSVDDNQFLDYQIEDPPALLPTFVCSNCPAIFTIKSDLGLHIRNEHSHIAAYLCGLCSQQCNSYMNLKTHLEACSQKCPSDKRYICQVCYYGEDNFRSLENHVLIHDFLIESCKKQLKIFDPADYVDINKNLENRKSFTCNKCGSNKFKSFKEFSAHRRTEHSIYHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLAQHFNKIHFAKRKLQYFDFKPVTSIWNDQEDPDLKDDTLAAPKEIDSTHNLYTNIITNYTPPSNEGDFKCPKCSKAFHKKVLLKKHKKNCRPKMQKDLLTRCKTCSRVFKDRQSLAKHLVNYHSEYTCEICSQKVQSKCEIVSHIRFQHPGCNLFCRMCKNILRNHEDMEEHIRDHSSSYICQFCGDSLSSKIKLKMHILSLHRKILSLSCGICLKLFENQHILKDHVTLVHKEQLAPFTSCPVCGKNYGSKWKTYDHLNKSHGMIFKACKTCLEVFNSEAQLQAHCDATNHGAQNASLLKNSFNSEIKEENEEETSSEELEGNSEESSEDESDKDRFSLSLLGKNSNKCVSKKVSKESNMDSVQGNSSKRTVYVNSNDPSCCEICFKTWPAKKHLWQHYIRCHKKVAATVCGICLKTNDTYEALQVHLKQTHPTLLHGQGFGSNFICRICGRYHNASSKLRLHMVIHEDFDWELLDGTKDEKKKDEDNAINYDSMIEQIVCSDNEEAERKCDKSNEEEVDDSSSDQESEDSLPFNAETKEDGDSSTESTSTYSEDSSEDSHFQNSDSMMNGGVFREVDSDKKSSSNEGADEKNPTTEYCDLQNENEIESAVGSIQNYFKSEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -