Cpri014558.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Cryptocephalus primarius
Gene Symbol
-
Assembly
GCA_963576515.1
Location
OY754949.1:891516-894825[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 1.2 69 4.4 0.6 1 12 4 15 4 17 0.90
2 19 0.00029 0.017 15.7 0.4 1 23 214 237 214 237 0.96
3 19 0.17 9.6 7.1 1.1 1 17 246 262 246 269 0.86
4 19 1.2e-05 0.00069 20.1 0.8 1 23 276 299 276 299 0.98
5 19 0.022 1.3 9.8 1.6 2 23 305 326 304 326 0.96
6 19 0.0028 0.16 12.6 2.4 1 23 333 355 333 355 0.98
7 19 0.016 0.92 10.3 3.3 1 23 387 410 387 410 0.95
8 19 0.32 18 6.2 9.5 1 23 418 440 418 440 0.97
9 19 0.038 2.2 9.1 3.7 1 23 448 471 448 471 0.95
10 19 0.1 6 7.7 1.2 2 23 496 517 495 517 0.96
11 19 0.16 9.3 7.1 0.7 1 23 522 544 522 544 0.94
12 19 0.064 3.7 8.4 5.5 1 23 549 571 549 571 0.99
13 19 0.061 3.5 8.5 1.1 1 23 578 600 578 600 0.98
14 19 2 1.2e+02 3.7 2.3 1 23 605 628 605 628 0.86
15 19 0.1 5.9 7.8 0.3 1 23 636 658 636 658 0.98
16 19 0.00038 0.022 15.4 1.2 1 23 667 690 667 690 0.96
17 19 0.00062 0.036 14.7 3.5 1 23 711 733 711 733 0.98
18 19 0.0022 0.13 13.0 2.0 1 23 739 761 739 761 0.98
19 19 0.0044 0.25 12.0 3.2 2 23 771 793 770 793 0.95

Sequence Information

Coding Sequence
ATGCTAAAATATGTCTGTCGACTCTGCCATCAGACTTTCAGCAAAGTCCACGTGGAGACTATACAGGAGATCAACAGGGAGGTGATCCAAGCGCTCGGGCTTTCTTTGGATTTGTCCGTGACCGCCGAACCAGTAGCTTGCCGAGACTGCCTGACGACTTTGGAGGATATGTTCAAGTTCAAATCGAAATGCATCTATATCGAAGATTACTTAACACCGTTCATGGAGAAAGGTGATAAACTCGACTTGAAAACCATCCATCCACAAATGGTAAATGCTAAGGATGACCCTAAGAAGATAGTTTGTCGGTTATGTTTTGCAGCCACCAATGATGCGAACATGTTAAACGAAAGCGAGAGGAACTCCTTCCTCTGGCTCTTTCCAGAAATCAATTTAACACAGACGAGCACCAAACATATCTGTGGGTCCTGCCACAAGTCCCTCAGGAAGTATTTCGAATTCGCCTCGTTTTGCATAAAGAACGAAGAAGAAAACATCAAGCACTACTTCGAATCAGTGAAAAACACCGAAAAAGTCAACGAATCTCTTAGAAAAAGCGACAAATGCACATACAAAGCATACCAGAAAACCTCGGTCCAGAAAGTTCACATGAAGTTAAATTTAGACCAAAACGGATATTATGAATGTCAAACGTGTGATTACGTCACGAACACAAAGGCTGCGTTACAACTACACCAGAAGGAAACGCATGATGTCTATAATGTGAGGAAGAAGTACAAATGCGAGAAGTGCGACTACAGCACGAACAGCAAAACCTATATGAAAACGGTACATGTGCTGACCCACCAGTCCACCTATGAAACTTATCAGTGCCCAGAGTGTCCCCTCAAAACGAAGTACCTTTCAAGCCTGAACAAGCACATAAACACGAAACACTCTGATCAAAAGCTCTATTGCTTCAACTGTCCATTCCAGACTATCCACAAGATATCACTGGTGAGGCATATGAAGATTCATCAGCGGGGTGAGAAGTTATTCAAGTGCGATAAGTGTGATTTCAGTACCTACAATAAGTACACCATGGTTACCCATTTGGAGACACACGGTCCTGATTACCGTTTTCAATGTAACAAGTGCAGTTTCAAATCGAAACTGCCTTTAGATCAGCACGTTTGTCGAGTGAGGAAGAAAAGGTCGCACATATGCGATATATGTGGGAAGAAGTATGACTCAGGTCACAGTTTTAGACTGCACAAAATGAGGGACCACGATGAAGACAAGGCAAATTACCACCAGTGCCCCCACTGTGACTACCGCACCTTTTACAAAAAACACATCAACAAACATTATAAGTTACATACCAATCCAGACAAGAACGTGTACAAATGCAACAAGTGCTCGTTGCTAACCTACTCATCCTACCATCTCAAAAATCATTTGGTGAAGGACCACCAGCTGGAGGAGGACTTCGACTTCGACCCTAGCTTACACTTGTACATGAAACACTTTCGTATGAGCACCCTCAAATGTACCAAATGCAGTTTCACAAGCGTCAGGGAGAAGACGATGAGGGCTCACGAGAGGGCTCACCTCACGTTTCCTTTCGCTTGCAAGCAGTGCCCTTATCGCACCGACACGGCCAAAAAATTGGACAGCCACAGAGTGAACCATTTCCCTCAGAGGTTCAAGTGTCCACACTGCGATTACAAGGCGAAGGTGAAGTGTGTGATGAAATTACACATGCGGAAACACGACAAACACACGGAGACGTACAAGTGCGCCCATTGCCCATTCGAGAGCAAATGGAAGGTCAGCCTGAGTAACCACATGAACATCCACCTGAAGAAGATGTTCAAGTGTAGGTACTGTGACTTTGAGACAGTGCACAAGAAGAGCCAGCTGAGCCACGAGGCGAACGTCCATAGAAAGGACGATCACCCAGAGTACAAGTGCGACTTGTGCGAGTTCACGACCAAAATCAAAGCTTCGATAATCTCACACCAGCTGGTGCACAAGGACCCTTCCGAGATGAAGATGTTCAAATGCGACGAGTGCCCCTTCGAAACGAAGTACAAGCGCAGCCTCCGCAACCACATCCGGGACCTGCACATGAAAGTGGCGAAGATACCCGAGAAAGAGAACGACTCGGATTCCGAGTGCGAGGAATCGTTCGAATGCCACATTTGCTCATTCAAGACGAAGAAAAAGAGTTACCTCGCCAGACACATCGCCAAACACACGAATGACAGGAGATTCAAGTGCCGCTTCTGTTCTTACGTGAGCAAGACGAAGGCCGCCTTGAAAGCGCACAACAAGACCCATCGGGTTTACTCCGAGGAGGAGCTGTCCAAGTGCCCTCACTGCGACTTCAAGAGCAAGTATCCGAGGAGCCTGAAGAATCATATTAGCAATAAACATGAGTCTTGGGAGGTCGTTGAGGAGGAGGATCACAAGAAAGTGGTGTCGTTGAATGCATGA
Protein Sequence
MLKYVCRLCHQTFSKVHVETIQEINREVIQALGLSLDLSVTAEPVACRDCLTTLEDMFKFKSKCIYIEDYLTPFMEKGDKLDLKTIHPQMVNAKDDPKKIVCRLCFAATNDANMLNESERNSFLWLFPEINLTQTSTKHICGSCHKSLRKYFEFASFCIKNEEENIKHYFESVKNTEKVNESLRKSDKCTYKAYQKTSVQKVHMKLNLDQNGYYECQTCDYVTNTKAALQLHQKETHDVYNVRKKYKCEKCDYSTNSKTYMKTVHVLTHQSTYETYQCPECPLKTKYLSSLNKHINTKHSDQKLYCFNCPFQTIHKISLVRHMKIHQRGEKLFKCDKCDFSTYNKYTMVTHLETHGPDYRFQCNKCSFKSKLPLDQHVCRVRKKRSHICDICGKKYDSGHSFRLHKMRDHDEDKANYHQCPHCDYRTFYKKHINKHYKLHTNPDKNVYKCNKCSLLTYSSYHLKNHLVKDHQLEEDFDFDPSLHLYMKHFRMSTLKCTKCSFTSVREKTMRAHERAHLTFPFACKQCPYRTDTAKKLDSHRVNHFPQRFKCPHCDYKAKVKCVMKLHMRKHDKHTETYKCAHCPFESKWKVSLSNHMNIHLKKMFKCRYCDFETVHKKSQLSHEANVHRKDDHPEYKCDLCEFTTKIKASIISHQLVHKDPSEMKMFKCDECPFETKYKRSLRNHIRDLHMKVAKIPEKENDSDSECEESFECHICSFKTKKKSYLARHIAKHTNDRRFKCRFCSYVSKTKAALKAHNKTHRVYSEEELSKCPHCDFKSKYPRSLKNHISNKHESWEVVEEEDHKKVVSLNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-