Cpri011771.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754946.1:1371064-1372323[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0065 0.38 11.5 3.1 2 23 87 109 86 109 0.96 2 11 0.17 10 7.0 0.1 1 23 129 152 129 152 0.95 3 11 0.0014 0.08 13.6 1.0 1 23 156 178 156 178 0.99 4 11 0.0013 0.078 13.7 2.1 1 23 184 207 184 207 0.96 5 11 0.009 0.52 11.1 0.3 1 23 213 235 213 235 0.90 6 11 0.00075 0.043 14.5 1.1 1 23 241 264 241 264 0.96 7 11 0.00055 0.032 14.9 0.6 2 23 276 298 275 298 0.96 8 11 1.2e-05 0.00071 20.1 1.0 3 23 311 331 309 331 0.96 9 11 2.3e-05 0.0013 19.2 1.5 1 23 337 359 337 359 0.97 10 11 1.2e-06 6.7e-05 23.3 1.3 1 23 365 387 365 387 0.97 11 11 0.0013 0.075 13.7 0.0 1 21 393 413 393 414 0.96
Sequence Information
- Coding Sequence
- ATGTACTGTGACCCTCGCCCTTCCAAGTATGTACGATGGCTGTGTTTTAGGTTCTTCCCAGACGTGGAGGTCGAGATGAAGATCGGCGACGACGTGCTGCGGTGCTTCGACAGCGACGCCGACGCCTCGTCGGTCAAGAAGTCCTCCGAGGACGACGCCGAGGACGAGGAGTACACGCCGCCCGGCCACAGGAGACGCAAGCCGAGGAGGAGAAAGGCGGCCGTCGAAAAAGTGAAGCGGCAGGAGCACAAGGTGTGGACGTGCAAGAGGTGCCTGGAGGAGTTCGATTCGAGGCGCCACCTGACGGACCACACGAAGACCTACCACGCGAAGGACGAGGAGGGCGAGAGCGCCACCTTTAAGTACGACGAGGCGCAGGACATCTACGTCTGCTCGACTTGCTCGGCCGAGTACCAGACCAAAGATGAGGTGCTCGAGCACGTCACGAAGGTCCACGAGGAATTTTACACGTGCGAGGTGTGCGAGCACACGGCCAAGAAGGCGTACAACTTCGCCGTGCACGTCAAAACCCACAACCCGGAGGAGATTTACAGCTGCCCGTTGTGCAGCTACAGCACCCCGAGGAGGACCTGCCTGAGAACACACATCGACCGAATGCACTACCACAAATTCTACTACACGTGCGCCACCTGCGGCAAAGGCTTTAATGACTCTGCCATCTTCAAAGAGCACAACAACGAGCACCTCGGCCTTAAGCCGTTCGTATGCGTCGTCTGTAACAAGACCTTCGTCTACTCCAGGTACATGCTGATACACCAGACGAGGTACCACACCGTGCACATAGAGGGCACGTTACACAAGACTCAGTGCTCGATATGCCTAAAGGTGTTCAGCAAGGTCCCGACGCTGCTCAAACACATCACTACCAAACACTCGATGTCATCATCGACGCCCGAGAAGCGCCACCTGTGCGACATGTGCGGTAAGGGCTTCGGCACGTCGGACAAGCTCAAGATCCACTACAGGATCCACACGGGGGACAAGCCGTTCGCGTGCACGTACTGCTCGAAACGGTTCACAAAAAGGGACTACCTCGTGATGCACGAGAGGGTACACACCGGCGAGAAGCCGTACATATGCAAGTTCTGCGGCAAGTGCTTCAACCAGGCCGCCTCCCTGAGGATTCACGTCAGGGGGCACACCGGCGAGAGGCCATATGTGTGCGAGTTCTGTAACGTCGGGTACATCTCCAGGGGCTCATTGAATATACATATGAAGATCTGCAAGGCCCTGTACTAG
- Protein Sequence
- MYCDPRPSKYVRWLCFRFFPDVEVEMKIGDDVLRCFDSDADASSVKKSSEDDAEDEEYTPPGHRRRKPRRRKAAVEKVKRQEHKVWTCKRCLEEFDSRRHLTDHTKTYHAKDEEGESATFKYDEAQDIYVCSTCSAEYQTKDEVLEHVTKVHEEFYTCEVCEHTAKKAYNFAVHVKTHNPEEIYSCPLCSYSTPRRTCLRTHIDRMHYHKFYYTCATCGKGFNDSAIFKEHNNEHLGLKPFVCVVCNKTFVYSRYMLIHQTRYHTVHIEGTLHKTQCSICLKVFSKVPTLLKHITTKHSMSSSTPEKRHLCDMCGKGFGTSDKLKIHYRIHTGDKPFACTYCSKRFTKRDYLVMHERVHTGEKPYICKFCGKCFNQAASLRIHVRGHTGERPYVCEFCNVGYISRGSLNIHMKICKALY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392099;
- 90% Identity
- iTF_00392099;
- 80% Identity
- -