Cpri017099.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754953.1:10262669-10264638[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9e-05 0.0052 17.3 2.4 2 23 146 167 145 167 0.96 2 11 0.00017 0.0097 16.5 2.2 1 23 173 196 173 196 0.93 3 11 0.00071 0.041 14.5 0.1 1 23 201 223 201 223 0.97 4 11 2.1e-05 0.0012 19.4 3.4 2 23 239 260 238 260 0.97 5 11 2.3e-07 1.3e-05 25.5 0.6 1 23 266 289 266 289 0.94 6 11 0.013 0.78 10.5 6.6 1 23 297 320 297 320 0.95 7 11 0.0016 0.091 13.4 0.7 2 23 341 362 340 362 0.92 8 11 0.0024 0.14 12.9 3.0 3 23 388 409 386 409 0.97 9 11 0.00048 0.028 15.1 4.6 1 23 429 451 429 451 0.99 10 11 0.031 1.8 9.4 2.8 1 23 457 479 457 479 0.97 11 11 1.1e-07 6.1e-06 26.6 2.2 1 23 485 509 485 509 0.93
Sequence Information
- Coding Sequence
- ATGGACACGACAAAGAAGCTGTCTTTTTCGGATTTCGCCCATGTTTGCAGGTTATGTTTGAAATTCGGGCAGTTCGACGATTATCTGAGCCTCAAGAGCGGCATCTTAGCGATGTACAACCACATTACCAACGTGCCGaTAAAGGACACTGATCTTCTCCCGAAAGGCATTTGTGAGGAATGCGTCGGCAGATTAGAAGACATTTCCAATTTCATCGAATCCTGCAAGTACAACCACTTCTACTTGACCGCCATAGCGATCCAAGAAGAAGACAAGCAACTGCTTCATAAGTCTGAGCTGCTAGTAGAAGAGGTGAAGAACGATCCTGACTTTAAGGTGCAAGATGTAGATGACGATGACAACGATGTGAAGTATTCAGAGGACGAGGGTATCCTGGAGGAAGAAGCGAGGGCGGTGGAGTCGTCTAAAAAGTGGAGCTGCAAGAAGTGTAACAAGACGTTCCGTACGGTAAATATGTTGAAGCTGCATCTGAGTAAACACCTCGGACTGAAACCGTACAAGTGCAAGTTGTGCAACAAGCGTTTCAATATAAAAGCATCATTGAAGAATCACAAGTTGGCCTACCACATACCGAAACCGTTCAAGTGTTCCATATGCAATTGGACCGGCAGCACTAGGGCTCTTCTAGAGGAACACGAGGCTAAGCACTCTTTAAACTATATACCAAAGTTGGTTCTGAGAGACAAGAAGTGGAAATGCGTCACCTGCGAGAAATCCTTCAGGAAGAAGAACGATCTGCACCGCCACCTAAGGGTCCACTCGGGCATCCGCCCGTTCGCCTGCACGATGTGCCCGAGGAGTTTCACCCAGAAATCGACATTGAAACGCCACATAAACGCGATACACGTGAAGGAGGAGCGGGCGAGCTTCGACTGCTACATCTGCGAGAAAAAGTTCCACAGGAAGGACCACATCGAGAGCCACATGATCAACTGCCACGTCGGCAAGACCAACGTCGAGGTGTACAACGACACTAGCATGGATATCCTGGACGACACCCAGTGCCAGCAGTGCGGCAAGGAGTTCAGCCTGAACATCTACCTGCGGCAGCACTCCGACCTGCACTACAAGTTCAAGACGAAGAGGCCGAAGCGGACGTCCTCGAAGCCGAAGGCCCCCGTCGCGCCGTCGCCGTGCCTCTGCAGCATCTGCGGCAGGTCGTTCCTGCGGTACGCGACGTTCTCGCAGCATATGAGGCGCTCTCACGGGCCGCCTGCGCCCGAGAAGAAGCCGATCAAGTCGGAGAAGAAGTCAGACAGCGTCTACCAGTGTTGGCTGTGCGGGAAGATCAAGTCGACCCACTGCAACCTGAAGGTTCACATGAGGACGCACACGGGAGAGAAGCCGTACCAGTGCAAGTTCTGTTTCAGGAAGTTCACGGCTTGGAACAGCTGGCACGACCACGAGAACATACACACGGGCGTCAAGCCGTATCAGTGCGAGCTCTGCAACAAGACCTTCAGGCAGAGGAGCTCGTTGAGGAAACATCTGAGGTCTTCGGTGCATTCCAAAACCGAGACGATGTAG
- Protein Sequence
- MDTTKKLSFSDFAHVCRLCLKFGQFDDYLSLKSGILAMYNHITNVPIKDTDLLPKGICEECVGRLEDISNFIESCKYNHFYLTAIAIQEEDKQLLHKSELLVEEVKNDPDFKVQDVDDDDNDVKYSEDEGILEEEARAVESSKKWSCKKCNKTFRTVNMLKLHLSKHLGLKPYKCKLCNKRFNIKASLKNHKLAYHIPKPFKCSICNWTGSTRALLEEHEAKHSLNYIPKLVLRDKKWKCVTCEKSFRKKNDLHRHLRVHSGIRPFACTMCPRSFTQKSTLKRHINAIHVKEERASFDCYICEKKFHRKDHIESHMINCHVGKTNVEVYNDTSMDILDDTQCQQCGKEFSLNIYLRQHSDLHYKFKTKRPKRTSSKPKAPVAPSPCLCSICGRSFLRYATFSQHMRRSHGPPAPEKKPIKSEKKSDSVYQCWLCGKIKSTHCNLKVHMRTHTGEKPYQCKFCFRKFTAWNSWHDHENIHTGVKPYQCELCNKTFRQRSSLRKHLRSSVHSKTETM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392101;
- 90% Identity
- -
- 80% Identity
- -