Basic Information

Insect: Cryptocephalus primarius
Gene Symbol: -
Assembly: GCA_963576515.1
Location: OY754947.1:13655561-13661853[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.7e-05 0.00097 19.7 0.8 1 23 140 162 140 162 0.97

2 15 0.00011 0.0064 17.1 0.3 3 23 170 190 169 190 0.99

3 15 0.00061 0.035 14.7 0.5 1 23 306 328 306 328 0.98

4 15 0.16 9.5 7.1 0.2 1 23 335 358 335 358 0.96

5 15 1.6e-06 9.1e-05 22.9 3.0 1 23 383 405 383 405 0.98

6 15 0.0034 0.2 12.4 0.0 1 23 418 440 418 440 0.95

7 15 0.52 30 5.5 0.0 1 23 446 469 446 469 0.94

8 15 0.079 4.6 8.1 1.1 3 19 478 494 477 495 0.95

9 15 0.00014 0.0083 16.7 4.7 1 23 504 526 504 526 0.97

10 15 0.0025 0.15 12.8 0.3 2 23 532 553 531 553 0.97

11 15 1.2e-05 0.00071 20.1 0.4 1 23 561 583 561 583 0.98

12 15 0.0012 0.069 13.8 0.1 3 23 591 611 589 611 0.97

13 15 0.00017 0.0097 16.5 0.3 1 23 617 639 617 640 0.95

14 15 0.1 5.8 7.8 1.8 1 23 654 676 654 676 0.96

15 15 0.00058 0.033 14.8 0.1 1 20 1056 1075 1056 1078 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.7e-05	0.00097	19.7	0.8	1	23	140	162	140	162	0.97
2	15	0.00011	0.0064	17.1	0.3	3	23	170	190	169	190	0.99
3	15	0.00061	0.035	14.7	0.5	1	23	306	328	306	328	0.98
4	15	0.16	9.5	7.1	0.2	1	23	335	358	335	358	0.96
5	15	1.6e-06	9.1e-05	22.9	3.0	1	23	383	405	383	405	0.98
6	15	0.0034	0.2	12.4	0.0	1	23	418	440	418	440	0.95
7	15	0.52	30	5.5	0.0	1	23	446	469	446	469	0.94
8	15	0.079	4.6	8.1	1.1	3	19	478	494	477	495	0.95
9	15	0.00014	0.0083	16.7	4.7	1	23	504	526	504	526	0.97
10	15	0.0025	0.15	12.8	0.3	2	23	532	553	531	553	0.97
11	15	1.2e-05	0.00071	20.1	0.4	1	23	561	583	561	583	0.98
12	15	0.0012	0.069	13.8	0.1	3	23	591	611	589	611	0.97
13	15	0.00017	0.0097	16.5	0.3	1	23	617	639	617	640	0.95
14	15	0.1	5.8	7.8	1.8	1	23	654	676	654	676	0.96
15	15	0.00058	0.033	14.8	0.1	1	20	1056	1075	1056	1078	0.94

Sequence Information

Coding Sequence: ATGGAGGAGACCTTTGATTTGACATGGGAAGACCCCTCCCATGTCGTCCAGACTGAAGAAGTCATTTGTGGGATGGAGAGTGAAATCCTACCTGCAGAAGGTGAACAGTTCTCTGGCGTACCAGAAGGTGTCGCCGAGGAGATTGTCGAAACGCCAGGTAGACGTGAGCAGATCCTGTATCACTTATCAGATGGTAACGTCCTGGTCATGCAGGAGTCTGACCAGACGTCCTACCAGGACCAATTAATGGACTGTCAGGTGTCGGAGGAGATAATAACTGAACACTGGGGCGATAGCTGTCCCGAAGAAATTGttatcgGTTCTGAGGAAGCCATTGGCGATACAGTTGAGGCTGGCCAAGAGGAGGACGACATAAAGTTGCCGACAGATCAGGATGAGTATACGGCGGCCAGACCATATCCCTGCGACTTCTGCAGCAGACGTTTCAGGAAAAAGGGCAACCTCATGAACCACATGATCGCCCACCAGACCGACAGACCGCACGGTTGCAACCTCTGCGGCGTACGTTACATCCGGAAGAGTGACCTGATGAATCACCTCAAGATCCACGCATACATCCCTGATACCGAAGTGATAGAGGAGGAGGACTCCCCTGTGGAGGACCTCGCCGTGCAGGAAAAGTTCAAGAAGAAACAGAAGCAGCTGGCAAAGAGAAAGAAGCGAGAGGAGCGAATCAAGCTCGAGGGTTATGGGGATGATGCCGGCGCGTCTGGTTCGTCCCATAACTTCACGTATgtcgaggaggaggaggtcgGCGCCTATGAGATGTCGAACGCCAGGGGGGCTGTTGAGTACCACCACCAAGAGTACATGCATAAtgacgacgaggaggaggaagagacGGTCCAGGAAGAAGAGGAGATACGTTATCCAGTGACGGACCCTCGCAAGCCATTCGTGTGCCAGCACTGTGGCGTCGCTTTCGCCAGGGAGAAGGCGATGCTGTCTCATACCAGGTTACATGCTGAGGGCGACAGCCCGTTTGAGTGCCAGAAGTGCGGCGACATGTTCTGGGACCCGGACCAAATGCGGGATCACGCGAGAAACAAGCACGGTGAAACAGAAGACCTcgaggacgacgacgatgaGGACTATTCCGACGATGACAGCAGCAAGTACGGAACGTTCTACTGCGCGACTTGCGGGATGTCGTTTCACAGGCAAGACAATTTGAGGAGGCACCAGCGGGTCCACATAAAGGAAGAGTACCTAAGCGAACACGCCTTTGGCCATGTGTGCAATGTATGTGGCGAATCCTTTCCTGAGGCCTTAGATTTGTTGGCTCATGCCGAGGTTCATGCTCGAACTATCGAGTATCGTTGCATGATCTGCGGGGACGTTATGACAGATGAAAGTGCTCTAGCTGTCCATGTACAGGCTAAGCATGGTAAGAACCTCCCCCCGAACTCGTGCATGTTGTGTGGTAGGGCATGCAAGGACCGCCGCACCCTCATGAAGCACTCGTGGGACCACTCGAAAGAGAAGGTGTTCGCTTGCTCGAAGTGCACAAAGACGTTCCACAACAAGGCGCGCCTCAAACGGCACATGCTGTCTCACAGGAGCAAGGCAGTGCAGTGCGATGTATGCGGCGAGGAGTTTCCCGATGGTAGGTCGCTCATGAATCACAGGCACAGTCACAGCAGCGTCTCTGGCAGGCAGTTCCCGTGCAGGGAGTGTGGCAAGACGTTCGGCTCGAGGAGCTCGCAGCAGATCCATATCCGGATACATACAGgTGAAAGGCCATATGGGTGTAGATATTGCTGGAAAGCCTTTGCGGACGGCGGTACCTTGAGGAAACACGAAAGAATACACACTGGTGAGAAACCTTACGCCTGTGCCGTTTGCCCAAGGGCTTTCAATCAGCGAGTTGTCCTGAGGGAGCATATTAGGTCGCACCATTCCGGACCTGACCCGAAATATTCTAACAGTATGACTCCATACTGTTGTTCGGTATGCTCGGACATGTTTGCCACCTCCCAGGACCTTATCTTGCACCTGATCCATCACTGCGATCTGAACACCGCTATGAAGAGACAACCTCAAGTGCGACCAAGGAAGTACAAACGTCGTAGGAAGTTGAAACCGCACGAGCTCGACCTGATCTCGAACAAAATGGACGAGGaggataatgataataatgaaatCAATGGGATGGGGATAGAGGAGACTTACACGGAGTCCGACGACGAGAAGGAGCAGAGGAAACGTGTGGGTAAGAGGCTGTCATCGAAGAAGACGTCGACATCTCCAAAAGAACGAAGTTCGGAAAGCCTTTCGGATATCTTCAACAATTCCACCTCGGTAATGGAGAATGTGAACCCTGTGAACCCAAAAGTGACGCCTCAGGGCAAGAACAAACAGAAAAAGATGAAGCTGGATCAAACTGTCCCGAGTCGACCGAAGATGATCCACACACAGAAAACTAGGGTTCCCGTTGAGGCCAGCGAAGACGGTAGAGTGAGGCATAGGACACGAACTCTGGTGACTAGGACACACCCTACAGAATTGAAGAGTGCCATCgGCGAAAGAATCAGACCGAGAACTAAGAACGTGAATTACCACATCTTGCACGAAAAGCTGCCGGCAGCGACGTTCCCCGGTTCCGACCAGGATACACAACGGGCCGTCGACAGTATCCTGAAGGACGAACCACGGGAGCAGGAGGTGATCGAGGAGGAAAGGCAGATGGAGGGGGTTATCGACAAGGAGGAAGTCGAAGAAGTTGTAGAGGACGGTGGGTCGGAGCAAGCGAGCAACGGCGTCGTCTACGCGGACGACGCTCAGCAGGCGCCGCCAGAGATCGCCTCCGAGCAAACAGTCGAGACGGAGGACGCGGTGCCCATTACGATGGTCCACGTCGCGAAGGGGAAGGGGAAGAATGTAGGGAGGCCGGTGAGATCATCGACGAGGCACGTTATCGGGCCGAGGAGCAAGGTTCGTATGATCAAACAGGGGATGATTGTGTCAAAGGTGAAGAAGGAACCGGAGCTGATCCTTCCCGATAACCCTGTAGAAGTCTTGAGAGAGGTGGAGGTGCCGCCTCCTTCGATAAAAGAAGAATTGATCACAATAAAGCAGGAGTTGGTCGATCCCAGTCCCCTCCATGAGCTCGCGGAGATCTCCATGCAGCACGCACAGAACCTCTTTAAGTGCGAGATGTGCAGCGAAGTGTTCTCAGACAGGGCACAGCTATTGGTACACGTTCCCATACATATTTGA
Protein Sequence: MEETFDLTWEDPSHVVQTEEVICGMESEILPAEGEQFSGVPEGVAEEIVETPGRREQILYHLSDGNVLVMQESDQTSYQDQLMDCQVSEEIITEHWGDSCPEEIVIGSEEAIGDTVEAGQEEDDIKLPTDQDEYTAARPYPCDFCSRRFRKKGNLMNHMIAHQTDRPHGCNLCGVRYIRKSDLMNHLKIHAYIPDTEVIEEEDSPVEDLAVQEKFKKKQKQLAKRKKREERIKLEGYGDDAGASGSSHNFTYVEEEEVGAYEMSNARGAVEYHHQEYMHNDDEEEEETVQEEEEIRYPVTDPRKPFVCQHCGVAFAREKAMLSHTRLHAEGDSPFECQKCGDMFWDPDQMRDHARNKHGETEDLEDDDDEDYSDDDSSKYGTFYCATCGMSFHRQDNLRRHQRVHIKEEYLSEHAFGHVCNVCGESFPEALDLLAHAEVHARTIEYRCMICGDVMTDESALAVHVQAKHGKNLPPNSCMLCGRACKDRRTLMKHSWDHSKEKVFACSKCTKTFHNKARLKRHMLSHRSKAVQCDVCGEEFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSNSMTPYCCSVCSDMFATSQDLILHLIHHCDLNTAMKRQPQVRPRKYKRRRKLKPHELDLISNKMDEEDNDNNEINGMGIEETYTESDDEKEQRKRVGKRLSSKKTSTSPKERSSESLSDIFNNSTSVMENVNPVNPKVTPQGKNKQKKMKLDQTVPSRPKMIHTQKTRVPVEASEDGRVRHRTRTLVTRTHPTELKSAIGERIRPRTKNVNYHILHEKLPAATFPGSDQDTQRAVDSILKDEPREQEVIEEERQMEGVIDKEEVEEVVEDGGSEQASNGVVYADDAQQAPPEIASEQTVETEDAVPITMVHVAKGKGKNVGRPVRSSTRHVIGPRSKVRMIKQGMIVSKVKKEPELILPDNPVEVLREVEVPPPSIKEELITIKQELVDPSPLHELAEISMQHAQNLFKCEMCSEVFSDRAQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00392065;
90% Identity: iTF_00392065;
80% Identity: -