Basic Information

Insect: Cryptocephalus primarius
Gene Symbol: -
Assembly: GCA_963576515.1
Location: OY754956.1:4980040-4984741[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00025 0.014 16.0 1.1 1 23 294 316 294 316 0.96

2 18 6.9e-06 0.0004 20.9 0.8 1 23 336 358 336 358 0.98

3 18 0.001 0.059 14.0 3.1 2 23 365 387 364 387 0.95

4 18 0.0067 0.39 11.5 1.0 1 23 393 415 393 415 0.98

5 18 0.074 4.3 8.2 0.1 2 23 426 448 425 448 0.95

6 18 0.00076 0.044 14.4 0.4 1 23 454 477 454 477 0.92

7 18 0.00086 0.05 14.3 1.5 1 23 483 505 483 505 0.98

8 18 2e-05 0.0011 19.4 3.6 1 23 511 533 511 533 0.99

9 18 0.0002 0.012 16.3 1.4 3 23 541 562 540 562 0.97

10 18 1.5 87 4.1 0.1 2 20 707 725 706 728 0.86

11 18 0.026 1.5 9.6 1.4 1 23 734 756 734 756 0.98

12 18 0.00063 0.036 14.7 2.2 1 23 762 784 762 784 0.91

13 18 0.00038 0.022 15.4 2.2 1 23 790 813 790 813 0.97

14 18 0.00048 0.028 15.1 2.1 1 23 824 847 824 847 0.96

15 18 0.035 2 9.2 1.1 3 23 857 877 856 877 0.98

16 18 2.8e-05 0.0016 18.9 1.3 1 23 883 905 883 905 0.98

17 18 5.4e-05 0.0031 18.1 0.6 1 23 911 933 911 933 0.97

18 18 0.23 13 6.7 0.0 1 20 939 958 939 960 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00025	0.014	16.0	1.1	1	23	294	316	294	316	0.96
2	18	6.9e-06	0.0004	20.9	0.8	1	23	336	358	336	358	0.98
3	18	0.001	0.059	14.0	3.1	2	23	365	387	364	387	0.95
4	18	0.0067	0.39	11.5	1.0	1	23	393	415	393	415	0.98
5	18	0.074	4.3	8.2	0.1	2	23	426	448	425	448	0.95
6	18	0.00076	0.044	14.4	0.4	1	23	454	477	454	477	0.92
7	18	0.00086	0.05	14.3	1.5	1	23	483	505	483	505	0.98
8	18	2e-05	0.0011	19.4	3.6	1	23	511	533	511	533	0.99
9	18	0.0002	0.012	16.3	1.4	3	23	541	562	540	562	0.97
10	18	1.5	87	4.1	0.1	2	20	707	725	706	728	0.86
11	18	0.026	1.5	9.6	1.4	1	23	734	756	734	756	0.98
12	18	0.00063	0.036	14.7	2.2	1	23	762	784	762	784	0.91
13	18	0.00038	0.022	15.4	2.2	1	23	790	813	790	813	0.97
14	18	0.00048	0.028	15.1	2.1	1	23	824	847	824	847	0.96
15	18	0.035	2	9.2	1.1	3	23	857	877	856	877	0.98
16	18	2.8e-05	0.0016	18.9	1.3	1	23	883	905	883	905	0.98
17	18	5.4e-05	0.0031	18.1	0.6	1	23	911	933	911	933	0.97
18	18	0.23	13	6.7	0.0	1	20	939	958	939	960	0.93

Sequence Information

Coding Sequence: ATGCAACCCGCCACACCTCGAAACGTCGCGCTCGCTCACGAAACCTTCTCATTGGCTGTACGTTCCAGATCGATCGAGGGGTCGAGGATCGAGGCGATCTTCATCGTCGAGGAGGATCCGCTATCGGACGTCATCGATCTGACGCGGGGCTCGCCGCCATTGGTCGAGACCGGCGTCGTGAGGACGCCGGATTATATCGTCGGAAAGGTACGGTTAAAACGTAACGGGGCGATCAAGGAACGGAAGAAGAACGATACGATCCTCCCGGCGGCGAATCACGGTGGCGATACCcctttttctaatttcttagggaagaggaaaaggaagaaggcGAATACTCAAATGGACGAACTGACGAGCTCCTTCCGCCTTCCGAACTTCAAGAAGGCGTGCGAGAAGAGGGGGCGCAAGGGCAGATACCAGAAGAACGGTATCCGTCAACCTGCCGACCGGCAGGTCGGGTTCTCGGTGCCGGTTCCCCCCTCGGAACCAAACCCTATTCCACCCTATTTCGCTATGGAAGCTATGCAACCCGCCTGCGCTCCGCCTTGGCTGTGCTATTCTCAGGTGGACGAATCGCGACACTTCGATTTTCGCGACGTGAGGTCCGATTGGGCCGTCGCGAAGGCGGGACCCCCCGATCGGGGCGCGGCGGGGGCGGAGCCCCTCCCGAGGATCACGAACGTGATGTCGCTGGCGGAGTCGGGGCGGGACGACGCCGCGACGGCGCCGAGCGGCGTCGCGATGCGGATGGTGACGATAGAGGGCGCGGGCGTCGTCGACGGCGTCGACGAGGACGCGGAGAGCTCGTTGCCGGTCACGGTGATCCTGAGGAGGAACGAGAGCGACGGCGAGACGCCCGAGGACGGCCGGCCGGCCCACAGCTGCCCCGAGTGCCGCAAGACTTTCGCGACGAGGCGCAGCCTCGGCGCGCACGCCTCGCGGCACCGGAGGCCCCGCGGCCTCgccgggcgtcgcgacgcgcccGGGGCGAGGCGCGAGGCGTTCCGGTGCGAGGTGTGCCAGAAGGTGCTCACGACCAAGTCGTCGCTCGCGATCCACCAGAAGCGCCACCTGAAGCTCTACGACCTGCACTGCGACTACTGCAAGAAGGGCTTCTACTCGAAGACCTCGCTGACGCTGCACGTGAACTCGAAGCACGAGGGCAAGTCGAGCTTCGTGTGCGAGATCTGCGCGAGGCCGTGCTACGACAGGACGAGCCTCGAGAGCCACCGCGAGAAGCACGACGAGAACTACGGCAAGAGGAAGGACGTCGAGTGCCGGCTCTGCGGCACCAGGTTCATAGCCGACAAGTACCTGGCGGTGCACATGTACAAGCTGCACAGCAAGGACAACAGGTTCGTGTGCGACCAGTGCGGCAAGAAGCTGTGCTCGAAGGTGAGCCTGCAGGAGCACGTGATCGCCGTCCACGAGGGCCTCAAGCCGCACAAGTGCGCCGTCTGCGAGCAGGGCTTCGCGAACCGGACGACGCTCAAGCTGCACGAGCGCCGCCACACGGGCGAGCGGCCGTACAAGTGCACGTACTGCGCGCGCGCCTTCACCCAGAGCCACAGCCTCAAGATGCACCTCAGGCTgcacacgggcgagaagccgGAGGCCTGCCACATCTGCGGCGGCAGCTTCGTCTCGAAGAACATGCTCAAGTCGCACCTCAAGATGAAGCATAAGATATTCGACGTGGCGACGGCGGTCAAGAACGTCGATAAGTACGATCTTCCCTCCCACTACGTCCCGGAGATCTCCATAACGACGTACGAGTCGGAGGTGAAGCTCAAGAGGCGCGCCGCCACCCGAAGGCACTACAAGAAGAACGGCACGCTCATGAGGAGCGTCGAGAGGAAGATCGAGAGGATCCAGCGCatggaagaggaggaggaggaggagaggaggcgCCAGGAGCAGACCTATCCGATCATCACGAACCTCCTGAAGGAGCTGTCGAACCACCAGCAGATCCTCGTGAAGCTCGAGACCTTGACCGAGTCCGCGGAGGGCGGCGGCGCCGTCGAGCCGAGGGGGGCGACGTCGCGGCGCAGGAAGGCGCCCGGGCCCGCGCGCAGGCCGCACCCCCCGCCGATCGACCTCGACGAGCCGATCAGCTGCGACGCGTGCGAGCGCACGTACCGCAACAACGTCGCCTACGCGCTGCACAGCGTCGAGCACACGTCGGACGGCAAGTACGAGTGCCACCTGTGCGACAGGCGCATGAACTCGAAGTACCAGATCGAGATGCACGTGCGCGCGCACGAGGGCACCACCAGGTACAAGTGCGAGGTGTGCGGCAAGGCGTTCACGACGTCGACGCACGCGCTCGAGCACAAGTACTTCCACACCGGCGAGAAGCCGTTCCAGTGCGAGATATGCGGCAAGCACTTCATGTTCTCCTGGTTCCTCACGTCGCACCGCATGGTGCAGCACCGGGAGATCATGACCGGCACGGCGATCAGCTACGAGTGCAAGCAGTGCGACAAGCGCTACGAGTCGTACAACGGCCTCAAGCGACACAACCTCACTAAGCACAGCGACGGCGTCGACCTGTCGGTGCTGTGCGACGTGTGCGGCAGGCGGCTCTCGAGCAGGGAGAAGCTCAAGTTCCACCGCAGGatccacacgggcgagaagccgtACTCGTGCCAGGTGTGCCTCAAGTCGTTCAGCAAGAAGATGAACCTGCGCGAGCACGAGCGCgtccacacgggcgagaagccgtTCCCGTGCAAGTACTGCGGCAAGGGGTTCACGCAGAGGGGCTCGCGCAGGATCCACGAGCGGGGCCACACGGGCGAGAGGCCGTACGTGTGCGTCGTGTGCTCCAGGGGGTTCGTCTCCAAGGCGGTGCTCGACGCGCACAGGGGCTCCTGCAGGATGAGCGCCGCGGACCCGTGA
Protein Sequence: MQPATPRNVALAHETFSLAVRSRSIEGSRIEAIFIVEEDPLSDVIDLTRGSPPLVETGVVRTPDYIVGKVRLKRNGAIKERKKNDTILPAANHGGDTPFSNFLGKRKRKKANTQMDELTSSFRLPNFKKACEKRGRKGRYQKNGIRQPADRQVGFSVPVPPSEPNPIPPYFAMEAMQPACAPPWLCYSQVDESRHFDFRDVRSDWAVAKAGPPDRGAAGAEPLPRITNVMSLAESGRDDAATAPSGVAMRMVTIEGAGVVDGVDEDAESSLPVTVILRRNESDGETPEDGRPAHSCPECRKTFATRRSLGAHASRHRRPRGLAGRRDAPGARREAFRCEVCQKVLTTKSSLAIHQKRHLKLYDLHCDYCKKGFYSKTSLTLHVNSKHEGKSSFVCEICARPCYDRTSLESHREKHDENYGKRKDVECRLCGTRFIADKYLAVHMYKLHSKDNRFVCDQCGKKLCSKVSLQEHVIAVHEGLKPHKCAVCEQGFANRTTLKLHERRHTGERPYKCTYCARAFTQSHSLKMHLRLHTGEKPEACHICGGSFVSKNMLKSHLKMKHKIFDVATAVKNVDKYDLPSHYVPEISITTYESEVKLKRRAATRRHYKKNGTLMRSVERKIERIQRMEEEEEEERRRQEQTYPIITNLLKELSNHQQILVKLETLTESAEGGGAVEPRGATSRRRKAPGPARRPHPPPIDLDEPISCDACERTYRNNVAYALHSVEHTSDGKYECHLCDRRMNSKYQIEMHVRAHEGTTRYKCEVCGKAFTTSTHALEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRMVQHREIMTGTAISYECKQCDKRYESYNGLKRHNLTKHSDGVDLSVLCDVCGRRLSSREKLKFHRRIHTGEKPYSCQVCLKSFSKKMNLREHERVHTGEKPFPCKYCGKGFTQRGSRRIHERGHTGERPYVCVVCSRGFVSKAVLDAHRGSCRMSAADP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -