Cpri018721.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:5086500-5088275[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1e-05 0.00062 20.3 1.7 1 23 125 147 125 147 0.98 2 12 0.31 18 6.2 0.2 2 23 152 174 151 174 0.93 3 12 4.5e-06 0.00026 21.5 0.2 1 23 180 202 180 202 0.98 4 12 0.0036 0.21 12.3 5.9 3 23 210 230 208 230 0.96 5 12 0.00027 0.016 15.8 0.1 2 23 237 258 237 258 0.97 6 12 0.00075 0.043 14.5 0.4 1 23 264 286 264 286 0.96 7 12 1.3e-05 0.00077 20.0 0.2 1 23 292 314 292 314 0.98 8 12 2.8e-05 0.0016 18.9 1.3 1 23 320 342 320 342 0.98 9 12 3.8e-06 0.00022 21.7 0.1 1 23 348 370 348 370 0.98 10 12 3e-07 1.8e-05 25.1 0.1 1 23 402 424 402 424 0.98 11 12 1e-05 0.00059 20.3 4.7 1 23 430 452 430 452 0.97 12 12 1.8e-07 1e-05 25.9 0.5 1 23 458 480 458 480 0.98
Sequence Information
- Coding Sequence
- ATGGAACGCGCCTTCAGCACAGATCAGCAGATGGAAGCGACGGGGCTCTGCCGGGCCTGCCTGGAGGAGGCCCCGCGACCGGGGCTCCGTTACCTGTTCGAGGATTCGCTGGACTCTCGGCTGAACGAGGCGGCTTCGCTGAGGGTGTGCAAAGGGGACGGGTTACCGGATTCCATCTGCGAGAGGTGCTACGCCGACTTAAACGCCGCTCTGGAGTTCAGGGAACGGTGCAAGAGGTCCGAGGGTGCGTTAGAGGAGATGCTACGTAGCAAGGGCGACGGCGGAGGGGTGAGCGCCGAACGAGGAGTCGAGGAGGACGCTTTGGAACCCGAGGGGGCCGTCGAGGAGACGGCGGAGGTGCCCGAGGAAGGCTTCCGTTGTAGGGGGTGCGATAAAACCTTCAAGTACGAGAGCTGGTACAGGATACACATGGTGAAGCACGGGGAGAAGTTGAGGTGCGAACTTTGCGACGAAGAGTTTCTAGCGGTGAAGGAGTACAAGCGCCACCAGAGGGCGTCGCACGCCGACTACCGCCCGTACAGCTGCGACGTGTGCCGCAAGTCCTTCGGCCAGTCGGCGAGCCTCGCGAGGCACGCGCGCGTCCACGACGGCGAGCGCAGGCACCTGTGCACCGTCTGCGGCAAGCGCTTCCACGAGCGCAACCACCTGGCGATCCACTCGAGGACGCACAGCGGCGAGCGGCCGGCTCGGTGCGCGACGTGCGGCAGGGGCTTCGCGAGCGCCGCCGCGCTCTCGAGCCACTCGAGGACCCACACGGGCGAGAGGCCGTACGCGTGCGCCGTGTGCGGCAGGAGGTTCGCGCACTCGTCCTCGCTCGGGCCGCACTCGAGGAcccacacgggcgagaagccgtACGAGTGCGCCGCGTGCGGCAGGCGCTTCGGCTCGTCGTCGTACCTGAGGGTGCACGCGAGGACGCACACGGGCGAGCGGCCGTACGCCTGTGACGGCTGCGACAAGAGGTTCGGGAGTAGGTGCGCGTTGTCGGCGCACCGCAAGACCCACACGGGCGAGAAGAATTTCCGATGCATGGTGTGCGGGAAGACGGCTGCGCGCGCAGCCGACCTCCGGGTCCACATGAGGTCCCATACAGGTACGTGTGAACCCTGCGGGTTCGTCTCGTTAATCCCGGACGGCTCGAGTCCAGTGATTGGGATATCGACCGTTGAGTGCGAGAGGCCGTACGCGTGCGCCGAGTGCCCGAAGCGCTTCCCGACGTCGAGCAACCTCGCGGCGCACCGTCGCTCCCACTCCGGCCTGAGGGAGCATGCGTGCCCGGTGTGCGGCATGACGTTCTGCGACCCGAGGACGCTCAAGTCCCACCACAGGACCCACACGGGCGAGAGGCCGTACGCGTGCGCGGACTGCGGCAAGCGGTACACGCAGTCCGGGCAGCTCGCCAAGCACAGGCGCACCCACGGGAAGGCCCCGGCTTAG
- Protein Sequence
- MERAFSTDQQMEATGLCRACLEEAPRPGLRYLFEDSLDSRLNEAASLRVCKGDGLPDSICERCYADLNAALEFRERCKRSEGALEEMLRSKGDGGGVSAERGVEEDALEPEGAVEETAEVPEEGFRCRGCDKTFKYESWYRIHMVKHGEKLRCELCDEEFLAVKEYKRHQRASHADYRPYSCDVCRKSFGQSASLARHARVHDGERRHLCTVCGKRFHERNHLAIHSRTHSGERPARCATCGRGFASAAALSSHSRTHTGERPYACAVCGRRFAHSSSLGPHSRTHTGEKPYECAACGRRFGSSSYLRVHARTHTGERPYACDGCDKRFGSRCALSAHRKTHTGEKNFRCMVCGKTAARAADLRVHMRSHTGTCEPCGFVSLIPDGSSPVIGISTVECERPYACAECPKRFPTSSNLAAHRRSHSGLREHACPVCGMTFCDPRTLKSHHRTHTGERPYACADCGKRYTQSGQLAKHRRTHGKAPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -