Cpri014681.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754949.1:1953230-1959915[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.078 4.5 8.1 1.8 2 23 164 185 163 185 0.96 2 16 2.2e-05 0.0012 19.3 4.5 1 23 190 212 190 212 0.98 3 16 0.001 0.059 14.0 2.5 2 23 219 240 219 240 0.96 4 16 0.0068 0.39 11.5 3.0 1 19 246 264 246 265 0.96 5 16 2.6e-06 0.00015 22.2 0.2 1 23 274 296 274 296 0.98 6 16 0.059 3.4 8.5 0.2 1 23 513 536 513 536 0.95 7 16 3.5e-05 0.002 18.6 4.6 1 23 542 564 542 564 0.97 8 16 8.5e-06 0.00049 20.6 3.6 1 23 570 592 570 592 0.98 9 16 4.1e-05 0.0024 18.4 1.6 1 23 598 621 598 621 0.95 10 16 0.0083 0.48 11.2 1.8 1 23 635 657 635 657 0.93 11 16 0.00015 0.0089 16.6 3.3 1 23 663 685 663 685 0.97 12 16 2.4e-06 0.00014 22.3 0.5 1 23 692 714 692 714 0.96 13 16 3.1e-06 0.00018 22.0 1.2 1 23 720 742 720 742 0.98 14 16 4.6e-07 2.7e-05 24.6 0.9 3 23 750 770 748 770 0.96 15 16 6.1e-05 0.0035 17.9 0.2 1 23 776 798 776 798 0.99 16 16 0.063 3.6 8.4 0.7 1 23 803 826 803 826 0.97
Sequence Information
- Coding Sequence
- ATGGAAATGGAAACCCTGAACTTCAACCAGATCTGCAGGACGTGCAAGTGCGTGTCGCCGCACATGAGGCCGATCTTCGAGGCTTACGAAAATCCGCAACAGAGTCCCCGAATTGACGAGATGCTAATGGCCTGCTCCGCCGTACAGGTGTTGTACGGGGACGGTTTACCCTCCCTGATGTGCTCGATATGCCTGGAACAATTAAAAGATGCCTATTGCTTCAAGAGGCAAGCAGAAAAGGTCGACGCCAGCCTGAGGGAATACTCAAAAACGATCAAAGTCAACGAGATCAAGCAGGAGCTACAAAACTCGGATTTCATCGATTCACTGAACACGCTGAACAACTTGCTGAATGACAGCCAATCGGACGTCCCAGAGCCGATCCAGCAGGAGCAGCCGTTGCCGATCCCCTCCGTCGCCATCCACCCGAACGGCCCGAAGCAAGAGACCGACTACATCCAGTTCATGGACAACAACCAGATGCTGCTGACGTGCCGGGAGTGCGCGAAAATATTCACGACGCTCGAGGGGCTCCGTTGCCACAAGAGGGTGCACACGGGCGGGATGTACAAGTGCAAGCAGTGCGACAAGGAGTACACGCGCCTGAACCACCTACAGCGCCACGAGCAGTCGCACAGCAGGAGGACCGTCAGGGTGTGCAGGATCTGCAGCAAGACGCTGACGAGGATGGAGCACCTCAAGAGGCACCTCGTCACGCACCTCAAGGAGAAGCCGTTCTCGTGCAAAACCTGCAACAGGGGGTTCACGAGGATCGAGCACCTGCATAATCACACGCCCAGGTGTAAAGGCGACACCGTCTATCCCTGCGACATCTGTAACAAGGCGTTCAATAGGGAGGACAGCCTGGAGGTACACAAGAAGATGCACGATAACCAGTCACCTAAACTGCCTACGATAGATAACCTCGACAACATCGAAGACCACTACTACGAGATAGATCAGGACGCGAACATGACCTTCTCCGATCACTCTGATTCGGAGGACGAGCGGGACAGCGACGACTTCTTCATGCCGCAGGTGGAGTACCATGATGAGACGGAAGAGAAGCTGCAATTACCGTCTGACGAGCCGATGCCGGAACAGGACGAGAGCAACATGAGCGAGGGATCGACCGGCGCCGATCTGATCGGGGAGAACGACGTCGAGGAGAACGAAGAGAACGAAGACGCTCCGGAGTGCCCGGCTCCCGAAACCAGCGGCGTCGATCAGGAGGCGAAGGCCCAGGACCTGGACATAAAGGACGTGAAGGTCGAAGACAACAAGTTCATCGAGGAGAACGAGCACATCGGGGAAGATAACCTAGGCGACGTAGGTGACGACGATTCGGGTAACAGCACGGACTCTGAATACCTGCCGAAGAAGGCGCCCCCTCCGGTGAAGCGGGGCCGCGGCAGGCCGAGGAAGGACCCGAACGCGCCCCCGAAGCCCGCGAAGACCAAAGTGCCGGGCAGGGGCAGGGGAAGACCGCCGAAAGGCTACAGCAAGCACGAcaaggaagaggaggaggtgGGGGAGTTCCCCTGCCTCGCCTGCAATGAGGTGTTCAACACGATGATGAAACTCGACAAGCACGCCCGCATCCAACACGAAGGCATAAAGGTCCACAAGTGCTCCGTGTGCAACAAGGACTTTGCGAGGGCGAACCACCTGAAGCGCCACCTGACGTCCCACTCGCCGATTAAGCCGTTCCGGTGCGGCTCGTGCCCGAAGAGCTTCAACAGGCGCGACCACCTCAACCAGCACCAGAAATTGCACGAAAGGCAGAATGAGTTCGAGTGCGAGGTGTGCCAGAAGCAGTTCAATCGCGCCGACCACCTCGCTAAGCACAAGGCGTCCAAGCATGGTATTGGGGACAAGGTGTCGTTGATGGGCGAGAAGAAATACGAATGCCCGCTGTGCCACAAGTTCTTCACGACGGAGAAGTACCGGGACATCCACGTGAACGGTCACAACGGCCAGAAGGAGTACGCCTGTAAGGTGTGCGAGAAGACGTTCCTGTCGAAGTCCCACCTGACGGAGCACATGAAGTTCCATAACGAGCATTCCAAGAAGTTCTTGTGTTCCGAGTGCGGCCAGAGGTTCATCAGGAACGATTACCTCGTCATACACATGAGGCGTCACAGGGGCGAGAAGCCGTTCAAGTGTAAATACTGCGGGAAAGGATTCCCTAGAACGACAGATCTGACAGTCCACGAAAGATATCACACAGGGGAAAAGACGCATCTCTGCACGATTTGCGGTAGAGGGTTCGGAAGGGCATACAATTTGACGGTACACATGAGGACCCACACCGGGGAAAAACCCTATCAGTGCACCTACTGTCAGGCGGCTTTCGCGCAAGGGAACGACCTCAAGGCGCACGTCAGGAGACACACGGGCGAACGTTTCCAATGCGAGCTCTGCACGGAGAGCTTCCTGATGGGGTACTTACTGACCCAGCACAAGAGGACCGTACACGGCTTGAACGTGGTGAGCAACATCAGGAGGCTGCAGCCGATCCACAAGCAGGAGAACCCCGACGACCCGCCGCCGATAACGATACCATTGCCGAAGCCGGTCATACCGGACAACGTGTTCAACGCGCTGCACGCCAACGCGGCGCTGCACGCTAACACGATACACGCGAACGCCATCCACGCGCAGCTCGCGCAGGTGGCGCAGCTGCACCTCGCCAGGGAGTAG
- Protein Sequence
- MEMETLNFNQICRTCKCVSPHMRPIFEAYENPQQSPRIDEMLMACSAVQVLYGDGLPSLMCSICLEQLKDAYCFKRQAEKVDASLREYSKTIKVNEIKQELQNSDFIDSLNTLNNLLNDSQSDVPEPIQQEQPLPIPSVAIHPNGPKQETDYIQFMDNNQMLLTCRECAKIFTTLEGLRCHKRVHTGGMYKCKQCDKEYTRLNHLQRHEQSHSRRTVRVCRICSKTLTRMEHLKRHLVTHLKEKPFSCKTCNRGFTRIEHLHNHTPRCKGDTVYPCDICNKAFNREDSLEVHKKMHDNQSPKLPTIDNLDNIEDHYYEIDQDANMTFSDHSDSEDERDSDDFFMPQVEYHDETEEKLQLPSDEPMPEQDESNMSEGSTGADLIGENDVEENEENEDAPECPAPETSGVDQEAKAQDLDIKDVKVEDNKFIEENEHIGEDNLGDVGDDDSGNSTDSEYLPKKAPPPVKRGRGRPRKDPNAPPKPAKTKVPGRGRGRPPKGYSKHDKEEEEVGEFPCLACNEVFNTMMKLDKHARIQHEGIKVHKCSVCNKDFARANHLKRHLTSHSPIKPFRCGSCPKSFNRRDHLNQHQKLHERQNEFECEVCQKQFNRADHLAKHKASKHGIGDKVSLMGEKKYECPLCHKFFTTEKYRDIHVNGHNGQKEYACKVCEKTFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCQAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPIHKQENPDDPPPITIPLPKPVIPDNVFNALHANAALHANTIHANAIHAQLAQVAQLHLARE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392055;
- 90% Identity
- iTF_00392055;
- 80% Identity
- -