Basic Information

Insect: Cryptocephalus primarius
Gene Symbol: -
Assembly: GCA_963576515.1
Location: OY754949.1:2723500-2728245[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.2e-06 0.00013 22.4 0.4 1 23 172 194 172 194 0.98

2 12 0.00071 0.041 14.5 0.1 1 23 200 222 200 222 0.97

3 12 0.00019 0.011 16.3 5.8 1 23 228 250 228 250 0.98

4 12 0.00012 0.0067 17.0 2.8 3 23 264 284 262 284 0.95

5 12 0.00015 0.0087 16.7 0.1 3 23 292 312 290 312 0.96

6 12 9.2e-07 5.3e-05 23.6 3.6 1 23 318 340 318 340 0.99

7 12 4.9e-06 0.00029 21.3 1.1 1 23 346 368 346 368 0.98

8 12 4.8e-07 2.8e-05 24.5 0.1 1 23 374 396 374 396 0.99

9 12 2.9e-06 0.00017 22.0 3.0 1 23 402 424 402 424 0.98

10 12 4.8e-06 0.00028 21.4 0.6 1 23 430 452 430 452 0.98

11 12 7.7e-07 4.5e-05 23.9 1.0 1 23 458 480 458 480 0.98

12 12 2.1e-05 0.0012 19.4 3.2 1 23 486 508 486 508 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.2e-06	0.00013	22.4	0.4	1	23	172	194	172	194	0.98
2	12	0.00071	0.041	14.5	0.1	1	23	200	222	200	222	0.97
3	12	0.00019	0.011	16.3	5.8	1	23	228	250	228	250	0.98
4	12	0.00012	0.0067	17.0	2.8	3	23	264	284	262	284	0.95
5	12	0.00015	0.0087	16.7	0.1	3	23	292	312	290	312	0.96
6	12	9.2e-07	5.3e-05	23.6	3.6	1	23	318	340	318	340	0.99
7	12	4.9e-06	0.00029	21.3	1.1	1	23	346	368	346	368	0.98
8	12	4.8e-07	2.8e-05	24.5	0.1	1	23	374	396	374	396	0.99
9	12	2.9e-06	0.00017	22.0	3.0	1	23	402	424	402	424	0.98
10	12	4.8e-06	0.00028	21.4	0.6	1	23	430	452	430	452	0.98
11	12	7.7e-07	4.5e-05	23.9	1.0	1	23	458	480	458	480	0.98
12	12	2.1e-05	0.0012	19.4	3.2	1	23	486	508	486	508	0.99

Sequence Information

Coding Sequence: atggacatgtccgcCTACTTGAATACGCCTTTGCAGCTGGACAAAATTTGCAGGGCCTGCCTGTCCGAGAGGGGCGACATGAGGCCCCTCTTCGGGGCCTGCCTCGACGAGATGCTCAACTCATTCGCTGGCATCGAGGTGGCAGTAGGTGACGGGCTCCCGGATCGACTCTGCCTCCAGTGCGTGCTCCAGTGCAGCCGCGCTTATACGTTCAAGCAGCTCTGCGAGAAGTCCGATAACATCCTCCGGCAATACCTATCGCCAGAGTTTCAAACTCAGCTGTCGGAGGCGTTGGAGAACACTCTCCAGGTGAAGTCGGAGTTGCAGGAACAGCTCCAGTTCCCGGACAACATCGCCAACGTCGTGATCGAGGAGGAAACCGCTGAGTTTGTCACCTACAATGAGGACGATCCCTTGGGTGAAAAGGAGGGAATCTACACGATCCAAGAGGTCTCTGTACAGCAAGAAGTGTTCAGCGATTCCGAAACCCCTGCGGACGGTGCTAAGTCCAAGTACCCCTGCTCGAAGTGCGATAAGTCCTTCGACCTGAAAGTGGACTTGAAGGTGCACATGTTGTCCCACCCGAAGGAGCTCGACTTCGTCTGCGAGATCTGCAACAAGGCCTTCGCCGAGGCTCGCATCCTGAAGCGGCACGCGAAGATCCACATGGAGACGAAGCCCCACCAGTGCGACCAGTGCCACATGTCGTTCGCCGAGAGCTCCAACCTGAGCAAGCACAAGAAGAAGCACACGGGCGAGCTGAGGAACATCAAGGGCAAACCTCACCTGTGCTCGGTCTGCGGGAGGTCCTTCAAGTGGTCCTCGAGCCTATCGAAACACATGAAGTACCACACGGGGCATAAGCTGCTAGCGTGCGAGTTCTGTGGCAAACAGTACGTCGAGGCCAGAAGCTTAACAATCCACATAAGATCCCACACAGGGGAGAGACCTTACGAGTGCGAGGTCTGCCATAAGACTTTCACGCAGGTCTGTAACCTGGAGAAGCACATCCGCGTCCATACGGGAGAGAAACCCTTTGAGTGCCCCGTTTGCCACAAGAGGTTCACCCAGTCCGGCTACGTGGGCATCCACATGCGCTCCCACACGGGGGTGAAACCGTACGTCTGCCAGGTGTGCGGCAAGGCCTTCGCCGGCTCCTCGACCCTAACGATACACCAGCAGACCCACACGGGTAGGAAACCTTACGACTGTACCATCTGCAAGAAATCCTTCAGCAGGCACGAGACGTTGGTGATCCACACGAGGACCCATACGGGAGAGAAACCGCACGTGTGTAAGGTGTGCAGCAAGGCCTTCGCCTCATCGGGACTGCTGTCGGGGCACATGAGGACCCACACGGGGGTCAAGCCATACGAGTGTACCGTTTGTAGTAAAAAGTTCGCAAGCTCGAGCAGCCTGAGGATCCACCTGAAGTCCCACAGTGACGTCAAGACGTACACctgtaaaatatgtaataaacatTTCCTGCAGTCCTCCAACCTCGACAAGCACATATTGACCCATACGATCGATGTAAAGGAGGAGAACGTAAAAATAGAGAATATACAAGTGactgaaattttGACCGTCGATAACCAGAGGATCAAGGTGCAGGCGATCACGTTGTAA
Protein Sequence: MDMSAYLNTPLQLDKICRACLSERGDMRPLFGACLDEMLNSFAGIEVAVGDGLPDRLCLQCVLQCSRAYTFKQLCEKSDNILRQYLSPEFQTQLSEALENTLQVKSELQEQLQFPDNIANVVIEEETAEFVTYNEDDPLGEKEGIYTIQEVSVQQEVFSDSETPADGAKSKYPCSKCDKSFDLKVDLKVHMLSHPKELDFVCEICNKAFAEARILKRHAKIHMETKPHQCDQCHMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRSFKWSSSLSKHMKYHTGHKLLACEFCGKQYVEARSLTIHIRSHTGERPYECEVCHKTFTQVCNLEKHIRVHTGEKPFECPVCHKRFTQSGYVGIHMRSHTGVKPYVCQVCGKAFAGSSTLTIHQQTHTGRKPYDCTICKKSFSRHETLVIHTRTHTGEKPHVCKVCSKAFASSGLLSGHMRTHTGVKPYECTVCSKKFASSSSLRIHLKSHSDVKTYTCKICNKHFLQSSNLDKHILTHTIDVKEENVKIENIQVTEILTVDNQRIKVQAITL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -