Basic Information

Insect: Cryptocephalus primarius
Gene Symbol: -
Assembly: GCA_963576515.1
Location: OY754956.1:5933107-5934904[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.1e-06 6.1e-05 23.4 4.1 2 23 139 160 138 160 0.98

2 12 3.2e-07 1.9e-05 25.1 0.7 2 23 167 188 166 188 0.97

3 12 0.0042 0.24 12.1 7.1 1 21 194 214 194 216 0.95

4 12 3.5e-07 2e-05 24.9 0.1 1 23 222 244 222 244 0.98

5 12 7e-06 0.0004 20.8 4.2 1 23 250 272 250 272 0.98

6 12 1.4e-06 8e-05 23.1 2.8 1 23 278 300 278 300 0.96

7 12 3.7e-08 2.2e-06 28.0 1.0 1 23 306 329 306 329 0.98

8 12 4.6e-06 0.00027 21.4 1.9 2 23 336 357 335 357 0.97

9 12 7e-06 0.00041 20.8 4.0 1 20 363 382 363 385 0.94

10 12 6.2e-05 0.0036 17.9 2.0 1 23 400 422 400 422 0.99

11 12 2.8e-07 1.6e-05 25.2 1.1 1 23 427 449 427 449 0.99

12 12 7.1e-05 0.0041 17.7 0.9 1 23 455 477 455 477 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.1e-06	6.1e-05	23.4	4.1	2	23	139	160	138	160	0.98
2	12	3.2e-07	1.9e-05	25.1	0.7	2	23	167	188	166	188	0.97
3	12	0.0042	0.24	12.1	7.1	1	21	194	214	194	216	0.95
4	12	3.5e-07	2e-05	24.9	0.1	1	23	222	244	222	244	0.98
5	12	7e-06	0.0004	20.8	4.2	1	23	250	272	250	272	0.98
6	12	1.4e-06	8e-05	23.1	2.8	1	23	278	300	278	300	0.96
7	12	3.7e-08	2.2e-06	28.0	1.0	1	23	306	329	306	329	0.98
8	12	4.6e-06	0.00027	21.4	1.9	2	23	336	357	335	357	0.97
9	12	7e-06	0.00041	20.8	4.0	1	20	363	382	363	385	0.94
10	12	6.2e-05	0.0036	17.9	2.0	1	23	400	422	400	422	0.99
11	12	2.8e-07	1.6e-05	25.2	1.1	1	23	427	449	427	449	0.99
12	12	7.1e-05	0.0041	17.7	0.9	1	23	455	477	455	477	0.99

Sequence Information

Coding Sequence: ATGCCTACTAGTGATTGGTGCATGCGAGAGGTGCCGGTGCAGACGATTCAGGAAAAGTTGTGGAGCTTCTGGAAAACGGTCAGCCAGGAAATTGAGCCCCACGAGAACATCTGCGAGAGCTGTAAGTCACGCTACGAGGACTTTTCGAAGTACGTGGAGGGTTATAAGAGCCACGCGCCCTCGATAGACGAGATGCTGTCCGGCAGGCGCGTCGAAGGTGGACCCTCGACTCTGCGATCGGATTCAAATCATCCTGCAGCGCCGGGAGGGATTAAAATCAAAGAGGAACCCTTGAACGACATCGAGGATCACGTGATCATGGAAGACGACGCGGCCGGCAATGATAAAGGAAGGGCTGGATTAGTTTTGTGGGTCGTCTTGGAGCGCCAAGTATTTCCAGGCCGGAAATCGAAGAAATGTTCGTATTGCCGTAAAGCGTTCAAATACTCTCGTAATTTGCAGAAGCACTTGCGTACTCACACCAACAGGGAACGTATTAAATGTTCACTTTGTCCAAAGACTTTCTCTCGGTCTGACAATATGAAGATTCACTTACGCGTCCATACCGGCGACATGCCTTTCGAATGTTCACTGTGCCATAAGAGGTTCGCTCAGCGCTTCAGTTTGAAATATCACTTGCGTTGCCATACCGGCGAAAGACCTTTCGAGTGTCCACAATGCGACAAGACTTTCCCTCGGGCCGGTACGTTGAAGTCTCACTTGCTCATCCATGCGGAAAGCAAATTGTTTACGTGTTCGCGCTGTAACAAGTCTTTTACTCAGATGGTTCACCTGAAGGGTCACATGCGCAGTCATACCGGCAAGAAACCTTACAAATGCCCAAAGTGCGACAAGACTTTCACGCAGTCTAGCCATGTGAAAACGCACTCAGCCGTTCACGCAAAAGACAAACCCTATCAATGCTCGTACTGCGGTAAGTTCTTCACTCAATCGGCCAACATGAAGAGACACATCGCGACAATTCATGCCGAAGATCGGACTCTTAGGTGTTGGCAGTGCAATAAAACCTTCACTTCGCCTTGTGAATTAAAGGCGCACCTGCTCACCCACACGGACTACAGACCATTCAAATGCTTGCACTGCGACAAGTCCTTCACCCAGGCTCGTCACTTGAGGAAACACTTGCCGGTCCATACCGGAGGCGAACCCGTCCAGCGTTGGCCGAGGGAGAAGATCTTCAAATGCACGCGCTGCGACAGGGCTTATTCCCGTAGTGGTCGTCTGGTTAACCACTTTCGCACCCATTCGGGCCAACCTTACGAGTGTCCGCAGTGCAAAAGGACCTTCACCGAGTCTGACACTTTGAAAGGACACATGCGTACGCACTCGAAGGAGAAGCCTTTCAGATGTTCGATCTGCAAAAAGCGGTTCGGTTGGCCGGGGTCCTTAAGGAACCACCTGCGCAGGCACGAGAAAAACGATGCTTCGTAA
Protein Sequence: MPTSDWCMREVPVQTIQEKLWSFWKTVSQEIEPHENICESCKSRYEDFSKYVEGYKSHAPSIDEMLSGRRVEGGPSTLRSDSNHPAAPGGIKIKEEPLNDIEDHVIMEDDAAGNDKGRAGLVLWVVLERQVFPGRKSKKCSYCRKAFKYSRNLQKHLRTHTNRERIKCSLCPKTFSRSDNMKIHLRVHTGDMPFECSLCHKRFAQRFSLKYHLRCHTGERPFECPQCDKTFPRAGTLKSHLLIHAESKLFTCSRCNKSFTQMVHLKGHMRSHTGKKPYKCPKCDKTFTQSSHVKTHSAVHAKDKPYQCSYCGKFFTQSANMKRHIATIHAEDRTLRCWQCNKTFTSPCELKAHLLTHTDYRPFKCLHCDKSFTQARHLRKHLPVHTGGEPVQRWPREKIFKCTRCDRAYSRSGRLVNHFRTHSGQPYECPQCKRTFTESDTLKGHMRTHSKEKPFRCSICKKRFGWPGSLRNHLRRHEKNDAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -