Cpri018694.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Cryptocephalus primarius
Gene Symbol
-
Assembly
GCA_963576515.1
Location
OY754956.1:4962157-4968287[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 38 4.9 2.9e+02 2.4 0.5 1 9 104 112 104 127 0.72
2 38 0.074 4.3 8.2 0.6 1 23 133 155 133 155 0.88
3 38 1.7e-06 9.9e-05 22.8 1.0 1 23 161 184 161 184 0.98
4 38 0.0019 0.11 13.2 1.5 1 23 196 219 196 219 0.94
5 38 0.00011 0.0062 17.1 0.3 3 23 230 250 228 250 0.97
6 38 0.00012 0.007 17.0 0.6 1 23 256 278 256 278 0.96
7 38 0.0024 0.14 12.9 2.3 1 23 284 306 284 306 0.97
8 38 2.5 1.4e+02 3.4 0.0 1 19 312 330 312 332 0.82
9 38 0.67 39 5.2 0.0 3 23 424 444 422 444 0.89
10 38 3.9 2.2e+02 2.8 3.5 1 23 450 472 450 472 0.97
11 38 0.021 1.2 9.9 2.2 1 23 478 500 478 500 0.90
12 38 0.00024 0.014 16.0 2.5 1 23 506 529 506 529 0.98
13 38 0.0023 0.13 12.9 1.1 1 23 541 564 541 564 0.94
14 38 0.0072 0.42 11.4 1.3 3 23 577 597 576 597 0.99
15 38 0.00012 0.0067 17.0 4.5 1 23 603 625 603 625 0.96
16 38 4.5e-06 0.00026 21.4 0.5 1 23 631 653 631 653 0.98
17 38 0.00025 0.014 16.0 0.1 1 21 659 679 659 680 0.93
18 38 2.7 1.6e+02 3.3 0.4 2 23 793 815 792 815 0.94
19 38 4.5 2.6e+02 2.6 0.1 1 23 841 863 841 863 0.95
20 38 0.21 12 6.7 0.7 1 23 896 919 896 919 0.96
21 38 0.00087 0.05 14.3 4.7 1 23 925 947 925 947 0.97
22 38 0.00039 0.022 15.4 0.1 1 23 954 977 954 977 0.95
23 38 0.034 1.9 9.3 0.3 2 21 989 1008 988 1011 0.89
24 38 0.00016 0.0093 16.6 1.9 3 23 1026 1046 1024 1046 0.96
25 38 0.00083 0.048 14.3 0.4 1 23 1052 1074 1052 1074 0.98
26 38 3.7e-05 0.0022 18.6 0.7 1 23 1080 1102 1080 1102 0.98
27 38 0.0099 0.57 10.9 0.0 1 21 1108 1128 1108 1129 0.96
28 38 0.0028 0.16 12.6 3.9 2 23 1168 1190 1167 1190 0.94
29 38 2 1.2e+02 3.7 0.1 1 23 1211 1233 1211 1233 0.96
30 38 0.00019 0.011 16.3 1.2 1 23 1237 1259 1237 1259 0.98
31 38 0.32 18 6.2 0.5 1 23 1265 1288 1265 1288 0.95
32 38 0.0087 0.5 11.1 0.1 1 19 1294 1312 1294 1316 0.93
33 38 0.00091 0.052 14.2 0.5 1 23 1322 1345 1322 1345 0.95
34 38 0.0032 0.19 12.5 4.7 2 23 1357 1379 1356 1379 0.93
35 38 1.2e-05 0.00072 20.1 1.7 3 23 1392 1412 1390 1412 0.96
36 38 1.6e-05 0.00094 19.7 2.0 1 23 1418 1440 1418 1440 0.98
37 38 3.4e-06 0.00019 21.8 1.2 1 23 1446 1468 1446 1468 0.99
38 38 0.11 6.2 7.7 0.9 1 21 1474 1494 1474 1495 0.95

Sequence Information

Coding Sequence
ATGCGGTCTTTAGGTACGCTAGTCTCCCGGGGGCTTTTTCAGttAAGGCGAAGAAAGCCGCACGAGGTGAGTCGCGCCGGCGGAGCCCCCGCCCCTTCAGCTATAACATCGCCCTCTATTTTCAGGACGCGCGGGCGGCAACGCCGCAAGCGGCCGGGGGGCCGCAGGAGGCCTGGAGGCCGCAGGAGGCCGTCGCCGGCGCCGCCGCTGCGCCTCGACGTCCCGATCCGGTGCTTCGCGTGCGACGCCCCCTTCCACACGAACATCTCGTTCGCGCTGCACTCGATCGAGCACGACCCGGCGGGCCGCTACCGCTGCCACCTGTGCGGCGAGTACACGAACGCCTCGAAGTACCGGATCGAGGCGCACGTGCGCAACCACGAGGGCACGAACAAGTACCGGTGCGAGGTGTGCGGCAAGGGGTTCGGCATCAGCACGCACGCGCTCGAGCACAGGTACCTGCACACGGGCGAGCGGCCGTTCCCGTGCGAGATATGCGGCAAGCGCTTCGTGTTCAGCCGCATGCTGACGAAGCACCGCAGGACCGTCCACTACGAGGCGATCTACGGCAGGAAGTTCGTCAAGTACGACTGCAAGGTGTGCGGCAAGCACTACGAGTCGCTGCCCGGGCTGCAGCGCCACACGTACAGCAAGCACAACGCCGGCCTGCAGGACTGGTCGGTCATATGCGAGGTGTGCGGCAAGAAGATCGCGAGCAGGGAGAAGCTCAAGTACCACATGCGCACGCACTCGGGCGAGAAGCCGCACGTGTGCGCCGCGTGCGGCAAGCGCTTCCCGAAGAAGGACCAGCTCAGGGAGCACGAGCGCGTGCACACGGGCGAGCGGCCGTTCGCGTGCGCCGAGTGCGGCAAGTGCTTCGGCCACAGGGCGCCCTACAAGTACCACCTCAAGATCCACTCGGGCGAGAGGCCGCACGTGTGCGGCGCCTGCGGCAAGGGGTTCATATCGAGGGCGGCGAAGGTCGTGCACTCGGCCGTGTGCCGCGTCGAGCCGCCCGACGTCGACGCCGATCCTTCCCGCAGGAGTTCCGACGAGggggaggacgaggaggaggagtgGCGACCGATGAAAACGCCCGAGAGGGCGAACAGGCGCGGCAGGAGGCGGGGCGAGGCCGACGCGGCGAACCCCaaggcgaagaagaagaagggggCGGAGCCGAGGGCGGCGCGCCGCAAGAAGAGGGCGGCGCCCGCCGCCGACGACAGGCGACACCCGCCGCCGATCGAGCTCGAGGAGCCGATCGCGTGCGAGAACTGCCCCGAGCGGTTCGGCAACAACGTCGCGTTCGCGCTGCACTCGGCCGAGCACTCGGAGGACGGGCGCTACACGTGCCACATGTGCTCCTACAGGAACGCCTCGAGGTACCACATCGAGATGCACGTGCGCGCGCACGAGGGCACCACCAGGTACAAGTGCGAGATATGCCAGAAGGCGTTCACGGTCTCGACGCACGCGCTCGAGCACAAGTACTTCCACACCGGCGAGAAGCCGTTCCAGTGCGAGATATGCGGCAAGCACTTCATGTTCTCCTGGTTCCTGGCCTCGCACCGTAGGACGTCGCACTACGAGATCCTCACCGGCACGCCGCTCGTCAAGTACGACTGCGCGCTGTGCAACAAGCACTACGCGAGCGCGAGCGGCCTGCGCAGGCACAACCTCAAGAACCACAACGACGCCGAGAACAAGTCCGACACGAGCGTCCTCTGCGACGTGTGCGGCAAGCGCCTCTCGAGCAGGGAGAAGCTCAAGTTCCACCTGCGCACGCACACCGGCTACCGGCCGCACTGTTGCCAGATCTGCCCGAAGAAGTTCTCGAAGAAGGAGCAGCTCATCGAGCACACGAGAGTGCACACCGGCGAGAAGCCGTACGTGTGCAAGTATTGCGGCAAGGGTTTCACGCAACGGACGCCGTTGCGGATACACGAGCGGATCCACACGGGCGAGCGGCCGCACAAGTGCCCGAAGTGCGGCAAGGGGTTCGTCTCGAAGACGGCGCTCGAGGGCCACGGCCGCGGCTGCTACGGCGCCGCCGTCGCCGCGCAGCCGCCCGCGTACGCGGCCTTCTTCGCGCAGAGCCCGGACGTCGTCGAGGTCAAGTACTCGACGACGGAGGCGTTCATAGAGGCCGCCAGGGGCGCCCTCCGAGACGCGCAGGTAAGCACTCACCCCCCTTACCCCCCTCCCCGGCCCGTCGCCTCCCCCCACCACCCCGCGCCGTCGATAGTAACGCCGAGCTTTTCCAGGTCGTCGTCGTCGCGGAGGAGGGGCCGGAGGCCGCGCAGGCGCGCGCCTCGCCGGAAGGCGCCCGTCGCCTCGCGCAGGTCGAAGCCGAACCAGAAGGCGCGCAGCTGGATGTGCAAGGTGTGCCTCGGCGAGTTCCCGTCGCGCAAGCGCCTCTTCGACCACCGCAAGCTCGAGCACGGCGGCGCCGAGGACGAGGCGCCCGGCGCCGGGCCGGAGCGCGCCAAGTACGCGTTCGACGAGGCGCTCGACATATACGTCTGCGCGAACTGCTCGGCGGAGTTCCACACCGAGCAGGAGGCGAGCGCGCACGCGGACACGCACGAGGAGAAGTTCGAGTGCACGGCGTGCGGCGAGGTGATAGCGACGGGCGCGCTCGACTTCTCCGCGCACCTGCAGGCGCACAGGTCGGACAAGAGCTTCCCGTGCCCGCTGTGCATGCACGTGTCGACGAGGAAATCGGCCATGCTGACGCACATCACGAGGATGCACTTCAGGAAGTACGACTTCCAGTGCAGGACGTGCGGCAAGTGCTTCAACGACGCGACGACGTTCAAGGAGCACGAGAAGTACCACGTGATCGGCTCGAAGATGTTCGTCTGCGTCGTGTGCGGCAAGGAGTTCGTGTACTCCCGGTACCTCGTCGCGCACCAGGTGCGCAACCACCGGGTGCGCGTCCTCGACTCGGACTCGAAGACGCAGTGCCACCTCTGCGCGAAGATATTCGCGCGCGACGAGACGCTCGCGCGGCACGTCGTCGCGAAGCACATCGACCTGAAGCGCGGCGGGCCGCACGAGAAGCGCCACCTGTGCGAGGTGTGCGGCCAGGGCTTCAGCCGCACCGACAAGCTCAAGATCCACACGAGGAAGCACACCGGCGAGCGGCCGTACTCGTGCTCGTACTGCGCCAAGGGCTTCATCAAGCGCGACTACCTCGTGATGCACGAGCGCGTCCACTCCGGCGAGAAGCCGTACTCGTGCGAGTACTGCGGCAAGTGCTTCAACCAGGGCGCGCCGCTCAGGATCCACCTGAGGGGCCACACCGGCGAGAAGCCGTACAAGTGCGAGCGCTGCGGCGCCGGCTGCGTCAGCAGGGGCGCGCTCAACGCGCACGTCAGGGGCTGCCTCATCGGCGGCAAGCCCGCCCGGCCGCCGCGCAGCCGCAGACAGGCCCGCCGAGCGGACGCCGCCGAGCCGCCGAGGCCGCGCCGCAAGTACGACTACAACAAGCAGTGGCCGTGCCGCAAGTGCCACCGCACGTTCCCGACGAAGCGCACGCTGATGACGCACCGCAAGGAGAAGCACTCGAAGAAGGACGACCACCAGGAGGAGCACACGTACAAGTACGACGAGCCGCAGGAGCTGTACGTGTGCAACACGTGCTCGGCCGAGTACCAGAACGAGCAGGAGATCGCGTCGCACGTGCTCAAGCACGGCGAGCACTTCGAGTGCCCGACGTGCTCGAGGAAATTCTCGAAGGCGTACGACTACGGCACGCACATGTCGACGCACGACCCGGAGAAGATGTTCAGGTGCCCGCTGTGCCAGTACAAGTCGCCGAAGCGGACCGGGTTCCTGGTGCACGTCAACTACGTGCACCTGAGGAAGTTCGTGTACGTGTGCGGCACGTGCGGCAAGGGCTTCAACGACGCCGTGCTGTTCAGGGAGCACGACAACGAGCACCGCGGCGTCAAGCCGTTCGTGTGCGTCGTATGCGAGAAGAGCTTCGCCTACTCGAGGTACCTGCTGACGCACCAGGTGCGCTCGCACCGCGTCGGCATCGACGGCCAGCTGCTGCCCAACCAGTGCCCGACCTGCAGGAAGTGCTTCTCGAAGGCGTCGACGTTCGAGAAGCACTTCCAGGAGAAGCACCGCGTCGCGAACGCGCCGCACCAGAAGCGCCACCTGTGCGAGATCTGCGGCAAGGGCTTCAGCCAGCGGAACAAGCTGCGCGTCCACAGGCGCGTCCACACCGGCTTCAAGCCGTACTCGTGCACGTACTGCTCGAAGAGCTTCACCAAGAAGGACTACCTCGTGATGCACGAGCGCGTCCACTCGGGCGAGAAGCCGTACTCGTGCGAGTACTGCGGCAAGTGCTTCAGCCAGGGCGCGCCGCTCAGGATCCACCTGCGCACGCACACCGGCGAGAAGCCGTACGTGTGCCGGTTCTGCTCGAACGGGTTCACGTCGAGGGGGGCGCTCAACATGCACCACAAGAACTGCACGGGGGCGTGA
Protein Sequence
MRSLGTLVSRGLFQLRRRKPHEVSRAGGAPAPSAITSPSIFRTRGRQRRKRPGGRRRPGGRRRPSPAPPLRLDVPIRCFACDAPFHTNISFALHSIEHDPAGRYRCHLCGEYTNASKYRIEAHVRNHEGTNKYRCEVCGKGFGISTHALEHRYLHTGERPFPCEICGKRFVFSRMLTKHRRTVHYEAIYGRKFVKYDCKVCGKHYESLPGLQRHTYSKHNAGLQDWSVICEVCGKKIASREKLKYHMRTHSGEKPHVCAACGKRFPKKDQLREHERVHTGERPFACAECGKCFGHRAPYKYHLKIHSGERPHVCGACGKGFISRAAKVVHSAVCRVEPPDVDADPSRRSSDEGEDEEEEWRPMKTPERANRRGRRRGEADAANPKAKKKKGAEPRAARRKKRAAPAADDRRHPPPIELEEPIACENCPERFGNNVAFALHSAEHSEDGRYTCHMCSYRNASRYHIEMHVRAHEGTTRYKCEICQKAFTVSTHALEHKYFHTGEKPFQCEICGKHFMFSWFLASHRRTSHYEILTGTPLVKYDCALCNKHYASASGLRRHNLKNHNDAENKSDTSVLCDVCGKRLSSREKLKFHLRTHTGYRPHCCQICPKKFSKKEQLIEHTRVHTGEKPYVCKYCGKGFTQRTPLRIHERIHTGERPHKCPKCGKGFVSKTALEGHGRGCYGAAVAAQPPAYAAFFAQSPDVVEVKYSTTEAFIEAARGALRDAQVSTHPPYPPPRPVASPHHPAPSIVTPSFSRSSSSRRRGRRPRRRAPRRKAPVASRRSKPNQKARSWMCKVCLGEFPSRKRLFDHRKLEHGGAEDEAPGAGPERAKYAFDEALDIYVCANCSAEFHTEQEASAHADTHEEKFECTACGEVIATGALDFSAHLQAHRSDKSFPCPLCMHVSTRKSAMLTHITRMHFRKYDFQCRTCGKCFNDATTFKEHEKYHVIGSKMFVCVVCGKEFVYSRYLVAHQVRNHRVRVLDSDSKTQCHLCAKIFARDETLARHVVAKHIDLKRGGPHEKRHLCEVCGQGFSRTDKLKIHTRKHTGERPYSCSYCAKGFIKRDYLVMHERVHSGEKPYSCEYCGKCFNQGAPLRIHLRGHTGEKPYKCERCGAGCVSRGALNAHVRGCLIGGKPARPPRSRRQARRADAAEPPRPRRKYDYNKQWPCRKCHRTFPTKRTLMTHRKEKHSKKDDHQEEHTYKYDEPQELYVCNTCSAEYQNEQEIASHVLKHGEHFECPTCSRKFSKAYDYGTHMSTHDPEKMFRCPLCQYKSPKRTGFLVHVNYVHLRKFVYVCGTCGKGFNDAVLFREHDNEHRGVKPFVCVVCEKSFAYSRYLLTHQVRSHRVGIDGQLLPNQCPTCRKCFSKASTFEKHFQEKHRVANAPHQKRHLCEICGKGFSQRNKLRVHRRVHTGFKPYSCTYCSKSFTKKDYLVMHERVHSGEKPYSCEYCGKCFSQGAPLRIHLRTHTGEKPYVCRFCSNGFTSRGALNMHHKNCTGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-