Cpri017828.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754955.1:1615549-1617315[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-15 1.1e-11 44.4 0.0 1 42 15 56 15 58 0.93 2 2 1 2.3e+03 -1.4 0.1 27 43 448 465 448 466 0.86
Sequence Information
- Coding Sequence
- ATGCCACGTAAGTACGTTAGAAAGACGCAGAGATCTTCTTGGACTCCAAAGCAGTTACAAGCAGCTTTGGATGCCATCGCAAATGGGTTATCAGAAAGGCAAGCtgccataaaattcaatattccaAGAACAACTCTCCAggagagaagaaaaaataaaattgtttctgcACCATCAATGGGACGAAAGCCAGTTTTCTCGGCTGCAGCTGAGACAGAACTTGCAGATCAAGTTAAAAAGTTATCTACTCTTTTTTTTGGTCTGACATCAAGAGAAGTTAAGAGGTGCGCTTTCACTTACGCCAAAAAGAATAACATAAAAATGCCATTTAActtggaaaaagaagaggcCGGTAACGACTGGGCACGAGGCTTCATGTCTCGCAATAATATTGTACTGAGAAAACCCGAGTCTACTAGCCTCAACAGAATCACGGCCTTTAATCGAGAGGAGGTgttaattttttgggaaaatctcAGGCGCCTTATGGAGAAGTATCAGTTTCTACCGCAGCGTATTTTCAACTGCGATGAGTCCGGGTTATCAACGGTGCAGCGGCCAAATAAGATCTTTGCAAAGAAGGGACAAAAGAGAGTTGGGTTTGTCACAAGCTGGGAAAAGGGAAAAACAACGACGGTGATGTGCTCCTTCAGTGCGTCAGGAATTTACGTACCAGTTATGTTCATATTTGCCCGGAAAAGAATGTCGCCACAATTAAAACGGAATGGGCCACCAGGAGCAATCTATGAATGCTCGGATAATGGCTGGATTACCGAGGAACTATTCATAGTCTGGCTTAATCATTTCCAAAGTTTTGTGAAGTCGTCCAAGGAAGACCCAGTGCTTCCAGTTCTGGACAACCATATCACCCACTGCACGCTTAAAgcttacaatttttgtagaaataatgGCATTATCGTCCTAACCATTCCACCGCACACCTCGCATCGTATGCAGCCGCTGGACGTTTcgtttttttattcattaaaagcTGCATATAACAGTGAGTGTGACAAATTTCTGACCAGCTATCCAGGGGAGAGAATAACTCCAAACGAGATAgccgaattatttaataaagcaTTCAGCAGGGTAGCCACACCTGAAAAGGCTATGAAAGGCTTCAGCGAAACCGGTATATTCCCCATAAACCCCGATGTTTTTACTGATGAAGATTTCGCTCCGGCAGAAAACTTACAAAAACCGCAATGCTTCAGGGATGAAGACAATAAAAtggaagaagaaagaagagagaaCGAGAAGACTCCGGAAAAGGCCACCAGCTCACTCGAaccgaaaaatatttccttcGCAGAAATAATCCCGGTACCATCCTCTTCTGGCATCACAAACAATACCTTTAAACCCAAAAGAAAGTCTACAAAAAAGCAGCATTCTATTGTATTCACTTCAACTCCATTAAAAGACGttttagaagaaaaagaaaaaaaaagaaccgATAAAAAGCTGAAGATAGTTGATAAATCGAAAAAACATGTGTTTGGGGCACGAGACCTTCAAACTAAAAATAGAGAGAGATCAAAACGCCCAAAAGCATTGGTTGATTACCAAGATATGGACGAGAATGAGCCTTTTCAAGGAGATGACTTGGATGCTGAAGTTACTGAAGATATATGTATCATATGTGGAGAATTTGGTAAAGACGGCGAAATATGGTTGAGATGCGTGATATGTGGCCAGTGGGCACATAAGGCTTGCGCAAACTCACCAAGAGAGAAGAAATTCATTTGTGACTTTTGTTTGTAG
- Protein Sequence
- MPRKYVRKTQRSSWTPKQLQAALDAIANGLSERQAAIKFNIPRTTLQERRKNKIVSAPSMGRKPVFSAAAETELADQVKKLSTLFFGLTSREVKRCAFTYAKKNNIKMPFNLEKEEAGNDWARGFMSRNNIVLRKPESTSLNRITAFNREEVLIFWENLRRLMEKYQFLPQRIFNCDESGLSTVQRPNKIFAKKGQKRVGFVTSWEKGKTTTVMCSFSASGIYVPVMFIFARKRMSPQLKRNGPPGAIYECSDNGWITEELFIVWLNHFQSFVKSSKEDPVLPVLDNHITHCTLKAYNFCRNNGIIVLTIPPHTSHRMQPLDVSFFYSLKAAYNSECDKFLTSYPGERITPNEIAELFNKAFSRVATPEKAMKGFSETGIFPINPDVFTDEDFAPAENLQKPQCFRDEDNKMEEERRENEKTPEKATSSLEPKNISFAEIIPVPSSSGITNNTFKPKRKSTKKQHSIVFTSTPLKDVLEEKEKKRTDKKLKIVDKSKKHVFGARDLQTKNRERSKRPKALVDYQDMDENEPFQGDDLDAEVTEDICIICGEFGKDGEIWLRCVICGQWAHKACANSPREKKFICDFCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -