Cmor001383.1
Basic Information
- Insect
- Cryptocephalus moraei
- Gene Symbol
- -
- Assembly
- GCA_946251935.1
- Location
- CAMIUL010000035.1:2180793-2200685[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0022 0.19 12.6 0.5 1 20 50 69 50 71 0.94 2 12 1.8 1.6e+02 3.4 0.9 1 23 78 101 78 101 0.89 3 12 0.0002 0.017 15.8 3.9 1 21 111 131 111 132 0.96 4 12 4.4e-06 0.00038 21.0 3.3 1 23 140 162 140 163 0.96 5 12 0.052 4.5 8.2 2.1 1 21 179 199 179 200 0.90 6 12 4.3 3.7e+02 2.2 8.9 1 21 228 248 228 249 0.94 7 12 0.11 9.6 7.2 1.7 1 15 257 271 257 274 0.87 8 12 0.42 36 5.4 6.1 1 21 292 312 292 313 0.94 9 12 1.4 1.2e+02 3.8 5.7 1 21 339 359 339 360 0.93 10 12 0.00045 0.039 14.7 5.8 1 23 368 391 368 391 0.90 11 12 0.091 7.9 7.5 5.9 1 21 415 435 415 436 0.94 12 12 9.9e-05 0.0086 16.8 1.7 1 23 444 467 444 467 0.91
Sequence Information
- Coding Sequence
- ATGTCTGACGCCGCCGATGCCAAGACCTGCACCATAAGGAAGACCTGCACGATGACCGCGCCGGACGGTACGCAGATCGAAGTTGAATGCATCTGCAGGTGCATAtgcaagtcaggcaactgcaaacattgcgactGGACGTCGGGGTTCTCCTGCTACACGTGCGAAAGGAGCTACGTGAACAAAAAATCTTGGCGTCGACACGTGCTCGAGTGCCAACGGGGGGCAGTGTTCCAGTGCATGTTCTGCCCCTACAAGAGCCTGAGGAGGTACCGCCTTAAGGCGCATGTAGATAACGTTCACGGGAATAAACAGTGCGTGATCCAGCTGTTCGAATGCAAGATGTGCTTCAAGATGTACAAGCACTTGAACAACCTGAACAGGCACCGTCGCTACGAATGCGGCAAAGCGCCGCAGTTCAGGTGTCCGCTCTGCCCCAAGGCTTACACCCAGAAGAGCAGCTTGAAGTACCACACCTCGAGACACCACAAGAAGCAACAGAATGTATTAAGCACGAATATTGTTAAGAATAAGTATGTCTGCCTGAAGTGCGGCCGAAAGTACTCCAAGAAGATCTCGTTGTATTGCCACTTGCGCAACTATTGCGGCAAGGAAAAGTCCTTCGTTTGCAAGCATTTAGCCTTCTACTACAAGTTGGTAGACGACGCGAAGCAGTTGTGGTTCTGTTGCAAGTCGTGCCCGAAGAAGTACAAGCACATGTCGTCCGTTCACAACCATCACAAgttcgagtgcaacaaggacccgcagttccagtgcAAGATATGCCTCAGGAAATTTCGACAGCCGGGTTTCTTCTGCCAGCAGTGCGCCGTATTTTACTACACGACACTGGACGAGAACAACCAAACATGGTTCTGCTGTAAAACTTGCCAGAAGAAATACAAGCACAGGCCCACAGTTTACGCTCATTACAGGTTCAAGTGCAGGTACAGCGCAGAAGCGCAGTACCGCTCTTTCTACTATAAGATGACGGACAACTTGAACCAGATCTGGTACTGCTGCAGGCTCTGCCCGAAGAAGTACAAACACCTCCCTTCAGTGCATAACCATTACAAGTATTCCTGCAAGAACACGGAAAAGTTCGAGTGCAAATTGTGCAACGAGTCGTTTAGGCACTCGTCGCATCTTGCGATACATTCTAGTCATAAACACAACATACGCGACTCTGGACGAATTTTTCAGTTCTATTACAAGTTCACCGACGACTGGAACACGACCTGGTACTGCTGCAAGGGCTGCTCGAAGAAGTACAAGCACCAGGCGTCCGTCTACAACCATTACAAGTTCTCGTGCAACAAGCTCGCCCAGTTCGAGTGCAAGATCTGCATGAAGCGGTTCCGCAGGAACGAGAACCTCAAGTACCACCTGGTGGAGAAGCACAAAGAGAATGCCTTCGACAAGTAG
- Protein Sequence
- MSDAADAKTCTIRKTCTMTAPDGTQIEVECICRCICKSGNCKHCDWTSGFSCYTCERSYVNKKSWRRHVLECQRGAVFQCMFCPYKSLRRYRLKAHVDNVHGNKQCVIQLFECKMCFKMYKHLNNLNRHRRYECGKAPQFRCPLCPKAYTQKSSLKYHTSRHHKKQQNVLSTNIVKNKYVCLKCGRKYSKKISLYCHLRNYCGKEKSFVCKHLAFYYKLVDDAKQLWFCCKSCPKKYKHMSSVHNHHKFECNKDPQFQCKICLRKFRQPGFFCQQCAVFYYTTLDENNQTWFCCKTCQKKYKHRPTVYAHYRFKCRYSAEAQYRSFYYKMTDNLNQIWYCCRLCPKKYKHLPSVHNHYKYSCKNTEKFECKLCNESFRHSSHLAIHSSHKHNIRDSGRIFQFYYKFTDDWNTTWYCCKGCSKKYKHQASVYNHYKFSCNKLAQFECKICMKRFRRNENLKYHLVEKHKENAFDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -