Cmor001342.1
Basic Information
- Insect
- Cryptocephalus moraei
- Gene Symbol
- Zfx
- Assembly
- GCA_946251935.1
- Location
- CAMIUL010000035.1:1958950-1966164[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.3e-05 0.0063 17.2 3.2 2 21 18 37 17 45 0.96 2 11 2.3 2e+02 3.0 6.0 1 23 46 69 46 69 0.94 3 11 0.011 0.94 10.4 1.1 1 21 84 104 84 105 0.96 4 11 3.1e-06 0.00027 21.5 2.8 1 23 113 136 113 136 0.96 5 11 0.0025 0.22 12.4 0.3 2 20 142 160 141 162 0.94 6 11 3.5e-05 0.003 18.2 0.1 1 20 170 189 170 191 0.94 7 11 0.001 0.087 13.6 2.6 1 23 199 222 199 222 0.96 8 11 8.2e-06 0.00071 20.2 0.3 1 21 265 285 265 286 0.95 9 11 8e-05 0.007 17.1 1.3 2 22 295 315 294 315 0.94 10 11 0.0027 0.23 12.3 1.1 2 19 320 337 319 339 0.94 11 11 0.0013 0.11 13.3 5.5 1 20 348 367 348 371 0.88
Sequence Information
- Coding Sequence
- ATGGTATCCTCAGATAACATGAAGACCATAGCTTTCGCACCTTACGAGTGGCAGTGCAACAAATGCTCGAAATTCTATAAACGGAAACGTGCGTTGCAGCGACACATAAAGTTTCAGTGCGACAGACAGCGATCGTTCCACTGCAAGTACTGTCTCTACTCCGGTTTCCTCAAGGAACACCTTAAGAGCCACGTCAGCAGGAAGCACAAAGACTTCGTGGATTCCTACACTTTAACCGATGACGGCTCGTACGTGTGCAACACTTGCTCCAACAGGTACAGGAGAAAGCACGgcgtcgtccagcacataaggtacgagtgcaacaagtcgccgcaattcgagtgcAAGTTCTGCTCGAAGAGGTTCAAGCAGAAGAACAACCTGAAGGTACACCTGACGATGGTGCACAGGTTAGTCCAAATAACCTGCCCGAATTGCTACAAGCAGTACAAGAACGAGAACACCCTGAAGGTGCACCTGTACCAGGACTGCGGGAAGTTGAAGACCTTCTACTGCGACGCCTGCGGGAAGGTGTTCAAGAACCTGAACAGCCTCAGGGCGCATCTCTCGTTGGACTGCATGATACTGAATAGGTTCCAGTGCGAGAACTGCCCGTTCACGACCAAGAGGAGGTACAACATGAAGATGCACTACGCGTCCAAGCACAAGATCCACATCGAGAGCGGAGTCCTGCGAAGGGAGGGCCTCAAGAGGAGTGACAAAGACGATTGCGACGATAACTACGAGATGTTGCAGTCCAAGTGTAACGTCCACGCAGTTTCAGATCAAAGATACATCTGCGACAATTGCGGCAAATCTTACAGATCCAGGCGTGCCCTATTAAGACACCTGAAGGACGATTGCGGCCAAGTGCCGAAATGGGTATGCAAGGAATGCAAATACAAGTCCACGAGGAAGGACACCCTCAGAAGGCACCTCAGGAAGCGCAACAACGTGCAGTGCCCGAAGTGTCTGAAGACGTTCAAGAACCACTCGAGCATGTACGTTCACTCCTACCAGACCTGCGGCATCGAGGCGAAGTTCTGTTGCCAGATGTGCCCGGCGAGGTTCAAGACGAAGAGCAGCCTGAACAGGCACTGCTTGAGGATCCACGCAGACTCTTACAGCTGA
- Protein Sequence
- MVSSDNMKTIAFAPYEWQCNKCSKFYKRKRALQRHIKFQCDRQRSFHCKYCLYSGFLKEHLKSHVSRKHKDFVDSYTLTDDGSYVCNTCSNRYRRKHGVVQHIRYECNKSPQFECKFCSKRFKQKNNLKVHLTMVHRLVQITCPNCYKQYKNENTLKVHLYQDCGKLKTFYCDACGKVFKNLNSLRAHLSLDCMILNRFQCENCPFTTKRRYNMKMHYASKHKIHIESGVLRREGLKRSDKDDCDDNYEMLQSKCNVHAVSDQRYICDNCGKSYRSRRALLRHLKDDCGQVPKWVCKECKYKSTRKDTLRRHLRKRNNVQCPKCLKTFKNHSSMYVHSYQTCGIEAKFCCQMCPARFKTKSSLNRHCLRIHADSYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -