Basic Information

Insect: Cryptocephalus moraei
Gene Symbol: Pkd2l1
Assembly: GCA_946251935.1
Location: CAMIUL010000302.1:1272158-1279403[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.15 13 6.8 0.2 2 23 33 54 32 54 0.95

2 16 0.37 33 5.5 3.6 1 23 58 80 58 80 0.98

3 16 0.00011 0.0093 16.7 0.6 1 23 86 108 86 108 0.98

4 16 7.1e-05 0.0062 17.2 0.1 1 23 114 136 114 136 0.94

5 16 8.2e-06 0.00071 20.2 0.2 1 23 142 165 142 165 0.98

6 16 0.00022 0.019 15.7 1.9 1 23 171 193 171 193 0.97

7 16 0.25 21 6.1 0.7 1 23 198 221 198 221 0.97

8 16 0.017 1.5 9.7 0.5 3 23 255 275 254 275 0.97

9 16 1.4e-05 0.0012 19.5 0.4 2 23 285 306 284 306 0.96

10 16 3.6e-07 3.1e-05 24.5 1.5 1 23 313 335 313 335 0.98

11 16 1.7e-05 0.0014 19.2 0.4 1 20 341 360 341 363 0.93

12 16 8.8e-05 0.0076 16.9 2.5 1 23 369 391 369 391 0.98

13 16 0.00029 0.025 15.3 0.9 1 23 397 419 397 419 0.95

14 16 0.075 6.5 7.7 4.0 1 20 422 441 422 443 0.94

15 16 0.52 45 5.1 3.4 2 23 453 474 452 474 0.96

16 16 2.5 2.1e+02 3.0 0.5 1 10 480 489 480 495 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.15	13	6.8	0.2	2	23	33	54	32	54	0.95
2	16	0.37	33	5.5	3.6	1	23	58	80	58	80	0.98
3	16	0.00011	0.0093	16.7	0.6	1	23	86	108	86	108	0.98
4	16	7.1e-05	0.0062	17.2	0.1	1	23	114	136	114	136	0.94
5	16	8.2e-06	0.00071	20.2	0.2	1	23	142	165	142	165	0.98
6	16	0.00022	0.019	15.7	1.9	1	23	171	193	171	193	0.97
7	16	0.25	21	6.1	0.7	1	23	198	221	198	221	0.97
8	16	0.017	1.5	9.7	0.5	3	23	255	275	254	275	0.97
9	16	1.4e-05	0.0012	19.5	0.4	2	23	285	306	284	306	0.96
10	16	3.6e-07	3.1e-05	24.5	1.5	1	23	313	335	313	335	0.98
11	16	1.7e-05	0.0014	19.2	0.4	1	20	341	360	341	363	0.93
12	16	8.8e-05	0.0076	16.9	2.5	1	23	369	391	369	391	0.98
13	16	0.00029	0.025	15.3	0.9	1	23	397	419	397	419	0.95
14	16	0.075	6.5	7.7	4.0	1	20	422	441	422	443	0.94
15	16	0.52	45	5.1	3.4	2	23	453	474	452	474	0.96
16	16	2.5	2.1e+02	3.0	0.5	1	10	480	489	480	495	0.82

Sequence Information

Coding Sequence: ATGACAGATCAGAACCCGACGTTAAAAATAAAGGAAGAGCCGTACTTCGACGAGTGCGCCGCCATCGCCACCGTCAAAGCGGAACCGCTCGAGCTGACCTGCGGTACGTGCGAAGCCCTCTTCGTCGACGAGCACGAGCTCCGGGTGCACAACATGATCCACTCGGACGACCACACGTGCTTCGTCTGCAAGGAGTTCGTCAAGAACAGGTTTCAGTTCGTCGGgcacgtccgcaagcacatgggccgcaggccgttcaggtgcccgagctgtgagaggacgttcgccacgtggagggagacgaagctgcacctgcgggtccacagcgataacaggccgttcatgtgcacggagtgcgggaaggccttcaagcagatcgcgacgttgaaggaccacgaggtggtgcacacgggagaaaagaggttcaagtgcaaaATTTGCGAAGGCGCCTTCGCGACGGCGACGAGCCTCCGCAGGCACATCAGGGTGATGCACGAAACGCTGCGATCATTCAAATGCCACTTCTGCAGCGAACAGTTCTCGAGCAGGGAGGCGCTGAACTATCACATGGCGGCCCACAAGGACAGACCATTCAAGTGTCAATTATGCGAGGAGACGATGGAGAACCTTGAGGACTACACGAGCCACCGGGACACGAGACACTTCCAGAAGAAGACGTCCGGGCTGTGCGCGTACTGCGCGAACCAGACGTTCTACTTCAACCTCAAGGATCACGTAGAGAAGATGCACAGCCCGAGGAACTGCGAGATCTGTGACTTGGTGTTCTACGACGACAAGTCGATGGAGAACCACAAGAAGAACCACTCAGAGGATTCCGTGAAGAAGGAGCTGAACtgcgacgtgtgcgggaagtcgttcgagttcccgcggtacttgaaggctcacgtgaaacgtcacggggacaactacaaaagattcaagtgtgatatctgcagcaaaacgttctcgtccaagagagacctcaataaccacctgaacgtccacgccgacgtgaaagactattcctgcaacatctgcgggaaggcgttcaggacgaagcagagcgtcaacaagcacctacccgtacattccgataaacgccctttccggtgcaatctgtgtgataaacgcttcaagaaacagtcgaTATTGAGGAAACATGCCCTTACGCATTCGATATCGCGGCCCTTCCTGTGCGATTTATGTCCGAAGAACTACAAATCAAAGGAATCCCTGAGGGTGCACAAGCTGAGTCACAGCTTTTACACGTGCAAGACATGCAAACAGACTTTTGCAGTGAAAGACTTGTATCACACGCATTACTGCGCCAAAAGGACGACGCACAGGCCGAGGCTGAAGTGCAGAGTATGCAGGAGGCAATGTAATCGTTCCATCACTCTGGCTTATCACACTTTGAGGCACTCGAAACAGCTGCCGTTTAAGTGCAAAACCTGCGGTGAAAAGACTATGGATAACGAAAGCAAGGTTCGAAAAGATGAGAGCAATAAAGTGATAAGTGAAGAGAACCGAGCAGAAAGTAACGAGCAGTATGGAAAGAAACAGGAAAAGCCACGCAAGAAAAAGGTTATATGGAAGACAAAGAATATAGCTGAAGATCTAGGCAGAGAAGAACTACTGAGTGCAACTTTCAACGAGTTTCTAACCTACGCAACCTTCGTGATATTCGTAACGATCTACATCGCTGGGAACAGGACAAGCGCCGCGTTTTACTTAACCAAAGGATTAGTGCAGCAATTCACCGAGAAGAGCTTCGACACGGTCAATTTCGTTAATATCCAGTTTATGGAGATTAGGACCGCTGCGGATTTTTGGTTTTACCTCGAAGATCACTTTGTCAAGAGTTTGTACTGGGAAAGTCATTATTCTGAGAAAGCGGAGAAAGTGGACCAAAACGCGATGAATATTTTAGGGGAAAATAAAGTTTTGGGGGTTCCCCGTATACGCCAAGTAAAAATGAGCAACAATTCTTGCGTGGTCCACGAATACTTCCGACATTTATTCTTGAATTGCTTCGACGCATATTCCATGGAAGATGAGGATAAAACACCTTTCGGCTTAAAGGAGAAACCAGCTTGGGTCTACACCGACAGTTCCCAAACCAAAAGCTTACCATTCGAAGGGGACGTCTCAGAGTACGGCGGCGGCGGATTTTACATAAACCTCAGCAATAACAAGAACGAGACGCAGAACACAATACAAACCTTGAGGGATAACCTTTGGATAACCAGGGGTACCAGGGCTGTGTTCATCGATTTCAGCACGTACAACGCCAACATAAACTTGTTCACAATTTGCAAACTGATGTTCGAGTTCCCGACGACCGGCGGAGTTTTACCGGACGCCGTGTTCCACAGCATGAAGTTGATCAGGTTCCACAGTAAATTCGATTACTTCATTTTAGGATGCGAAGTGGTTTATTACTGCTTTATAATATTTTACGCTATGGCGGAGTTGCGCGAGTTAATCTACTTCAAGTGGAGGTATTTTTTGAACTTCTGGACGTACATCGACCTCACTATCATTATGTGCGCCGTTGTGGGAGCCTTCACTTCCGTCATAGAGCAAATGAACGTCCGCCCGACAATAAACTTCATCAAGGACCATCCGGATGAGTACGGTAACCTGGAATACCTGGCTAGTCTCCACAAATTAAACACCAACGTCTCGGCTGTAAACTTATTTTTCATTTACATCAAGGTGTTCAAGTTCCTGAACTTCAATAAGAGCATGGGGCAGTTAAACAATACACTGTCAAAGTGCGCATGGGACATTCTTGGATTCTCCCTCATGTTCTTCATTATATTTTTCGCGTTCGCCGAGCTTGGCTATCTGTTATTTGGAAACCAGGTAGACGACTTCAGCAGTTTCGGGATTGCGATGTTCACGCTTCTTAGGACGATCTTGGGCGATTTCGATTACAGCGAGCTCGAGAAGGCCAACAGGATGTTAGCGCCGGTTTATTTCATCTCGTACATATTCCTGGTTTTCTTCGTCTTACTAAACATGTTCTTGGCGATTATAAACGATACCTACGCAGACGTGAAGACCGAGATAGCCATCGCCCCCGACGAGGTTCAAATGTTGGAATACCTCAGAGACAGATTCAAAAATCTGTTGAGAAAGTTTGGTTGTATGAAAGGAGAAGTCGCCCGATCAGAGATCAAACACGAAATGAACGTTACGGTAAGGCAGATTCGGGACAACCTCAAAAGGTGTGGTTTCAACGACTTGGAGATCGAGATGTTCTTCGCCAGGTACAACGTCCATCCATTGGCCGAGGTGAACGTGAGCAACGTCGATCAGTTGAGAACAGAGCTCGAGAAAATTATGGAAGAAAGTGATGACAGTAGCCGTTTCGTCCGCCTGGAAGATTTTCAAGCGCAGCAAGACAAGATGGAGCACATCGACAAGCAAGTATCCATCCTGATTCGCCACGTAAAGACGCTCCTGGATAGGCTCGATCAAATGGAGAATGTTAGGAAAACCCAGATGTAA
Protein Sequence: MTDQNPTLKIKEEPYFDECAAIATVKAEPLELTCGTCEALFVDEHELRVHNMIHSDDHTCFVCKEFVKNRFQFVGHVRKHMGRRPFRCPSCERTFATWRETKLHLRVHSDNRPFMCTECGKAFKQIATLKDHEVVHTGEKRFKCKICEGAFATATSLRRHIRVMHETLRSFKCHFCSEQFSSREALNYHMAAHKDRPFKCQLCEETMENLEDYTSHRDTRHFQKKTSGLCAYCANQTFYFNLKDHVEKMHSPRNCEICDLVFYDDKSMENHKKNHSEDSVKKELNCDVCGKSFEFPRYLKAHVKRHGDNYKRFKCDICSKTFSSKRDLNNHLNVHADVKDYSCNICGKAFRTKQSVNKHLPVHSDKRPFRCNLCDKRFKKQSILRKHALTHSISRPFLCDLCPKNYKSKESLRVHKLSHSFYTCKTCKQTFAVKDLYHTHYCAKRTTHRPRLKCRVCRRQCNRSITLAYHTLRHSKQLPFKCKTCGEKTMDNESKVRKDESNKVISEENRAESNEQYGKKQEKPRKKKVIWKTKNIAEDLGREELLSATFNEFLTYATFVIFVTIYIAGNRTSAAFYLTKGLVQQFTEKSFDTVNFVNIQFMEIRTAADFWFYLEDHFVKSLYWESHYSEKAEKVDQNAMNILGENKVLGVPRIRQVKMSNNSCVVHEYFRHLFLNCFDAYSMEDEDKTPFGLKEKPAWVYTDSSQTKSLPFEGDVSEYGGGGFYINLSNNKNETQNTIQTLRDNLWITRGTRAVFIDFSTYNANINLFTICKLMFEFPTTGGVLPDAVFHSMKLIRFHSKFDYFILGCEVVYYCFIIFYAMAELRELIYFKWRYFLNFWTYIDLTIIMCAVVGAFTSVIEQMNVRPTINFIKDHPDEYGNLEYLASLHKLNTNVSAVNLFFIYIKVFKFLNFNKSMGQLNNTLSKCAWDILGFSLMFFIIFFAFAELGYLLFGNQVDDFSSFGIAMFTLLRTILGDFDYSELEKANRMLAPVYFISYIFLVFFVLLNMFLAIINDTYADVKTEIAIAPDEVQMLEYLRDRFKNLLRKFGCMKGEVARSEIKHEMNVTVRQIRDNLKRCGFNDLEIEMFFARYNVHPLAEVNVSNVDQLRTELEKIMEESDDSSRFVRLEDFQAQQDKMEHIDKQVSILIRHVKTLLDRLDQMENVRKTQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -