Cmor013980.1
Basic Information
- Insect
- Cryptocephalus moraei
- Gene Symbol
- -
- Assembly
- GCA_946251935.1
- Location
- CAMIUL010000461.1:247631-249395[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.6 6.6e+02 1.4 0.1 3 15 46 58 45 61 0.82 2 14 1.9e-05 0.0016 19.1 0.1 2 23 100 121 99 121 0.97 3 14 2.5e-06 0.00022 21.8 1.1 1 23 127 149 127 149 0.98 4 14 5.2e-06 0.00045 20.8 0.9 3 23 157 177 155 177 0.98 5 14 8.9e-06 0.00077 20.1 1.7 1 23 183 205 183 205 0.97 6 14 5.1e-07 4.5e-05 24.0 5.0 2 23 212 233 212 233 0.97 7 14 0.00047 0.04 14.7 0.5 1 23 239 261 239 261 0.95 8 14 1.4e-06 0.00012 22.6 0.7 1 21 267 287 267 288 0.96 9 14 4.2e-05 0.0036 18.0 0.1 1 23 295 317 295 317 0.98 10 14 1.4e-06 0.00012 22.6 1.9 1 23 323 345 323 345 0.98 11 14 5.1e-05 0.0044 17.7 4.4 3 23 353 373 351 373 0.97 12 14 0.0012 0.1 13.4 0.3 2 23 378 400 377 400 0.96 13 14 0.0002 0.017 15.8 0.3 1 23 406 429 406 429 0.93 14 14 3.3 2.9e+02 2.5 1.7 1 23 435 457 433 457 0.86
Sequence Information
- Coding Sequence
- ATGGAGGAGACAGCTACGAAGTGCGACTGGTGCCTAAGAGAGGGGGCACCCTCGAGACCGATCGAGGAGAGGTTATGGCGCTTCTGGAAGATAATCAGCAAAGAAGACGCGCACGCGCCGACCGGCCGCAACATCTGCTCCGTCTGTGACGCCCGCTACGACCGCTTCCACGACTACATCGAGACGTGCAAGCGCAACGAGTCGATCGTCGCTCGCCTCCTCGTCGAGCCGCACGTCAAGCCGGAGGAGTCGCTGTACATCGaggaccacaccatctgcaaacctcgccgaaccgtcgagtgcccgcgctgcgcggcgaagttcacgcagccgtcgagcctccgttcgcacctacgcatccacacgggcgacaagccgtacaggtgcacgtgctgcccgaaggcgttcgcgcagtcgtcggcgctcaacgcccacctgcgcacccacacgggcgagaaaccgttcggatgctcgcagtgcgacaagcgcttcatcacgtcgtcgagcctccgagtccactcgcgcgtccacacgggcgagaagccgttcgcgtgtccgcactgcgacaagatgttctcgatgtcgtcgagcctcgacatccatctgcacatccacgcgggcaacggcgccgccacgtgtcatttgtgcggcaagtgtttcacgcaaccgtcgagcctcaagtcgcacctgaagatccattcgggcgagaagccgttcgagtgcccgtcgtgcccgagacgcttcatgttcgccgcccaactgcggaagcactcgtacgtccacgccgacgacaagccgttcgagtgctcgcactgcgataggcgcttcgcgaccgccgagtacctcaggaagcacctacggatctacacgggcgacaagccgtacaagtgcgcgtcgtgcgacaagagcttcatcgcagccgccatgctcaagcgacacctcgccgtccacacgggcctcaagccgtaccactgcgagctctgcgacaaggccttcacgcagctcgccacgctcaagaaccaccgccggatccacgatggcgtcaaggcgtacgggtgctcgcggtgcggcgtcaggttctgccactcgtcgcaactgcggcggcacttgcagatacacgcggagccgttgagatgctcgctgtgcgacgaaatatacttctcgttgccgagcctgaaacggcacctcgcgacgaggcatcctccggacaggccgTTCTCGTGTCCGTACTGCGGGAGGTGCTTCGCTGAGTCGATCGGGCTCGAGGGGCACTCGAGGGCGTCGCATCCGGGTAAGCGGTGTTTCGTGTGCGAGAGGTGCTGCGCGAGCTTCGGCGAGGCGGACGCTTTCAGGGAACACTTGAGCGGCCATGGCCATTGA
- Protein Sequence
- MEETATKCDWCLREGAPSRPIEERLWRFWKIISKEDAHAPTGRNICSVCDARYDRFHDYIETCKRNESIVARLLVEPHVKPEESLYIEDHTICKPRRTVECPRCAAKFTQPSSLRSHLRIHTGDKPYRCTCCPKAFAQSSALNAHLRTHTGEKPFGCSQCDKRFITSSSLRVHSRVHTGEKPFACPHCDKMFSMSSSLDIHLHIHAGNGAATCHLCGKCFTQPSSLKSHLKIHSGEKPFECPSCPRRFMFAAQLRKHSYVHADDKPFECSHCDRRFATAEYLRKHLRIYTGDKPYKCASCDKSFIAAAMLKRHLAVHTGLKPYHCELCDKAFTQLATLKNHRRIHDGVKAYGCSRCGVRFCHSSQLRRHLQIHAEPLRCSLCDEIYFSLPSLKRHLATRHPPDRPFSCPYCGRCFAESIGLEGHSRASHPGKRCFVCERCCASFGEADAFREHLSGHGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -