Cmor018267.1
Basic Information
- Insect
- Cryptocephalus moraei
- Gene Symbol
- -
- Assembly
- GCA_946251935.1
- Location
- CAMIUL010000820.1:26268-30627[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 7.4e-06 0.00064 20.3 2.4 1 23 179 201 179 201 0.98 2 19 2.7e-05 0.0024 18.5 1.2 1 23 207 229 207 229 0.97 3 19 5e-05 0.0043 17.7 5.2 1 23 234 257 234 257 0.98 4 19 6.3e-05 0.0055 17.4 0.2 2 23 273 294 272 294 0.96 5 19 0.0064 0.56 11.1 0.2 1 22 301 322 301 324 0.85 6 19 0.0025 0.21 12.4 0.1 1 23 332 354 332 354 0.96 7 19 0.00021 0.018 15.8 0.1 1 23 360 382 360 382 0.96 8 19 3.2e-05 0.0027 18.3 0.4 1 23 388 410 388 410 0.97 9 19 9.6e-06 0.00083 20.0 2.6 1 23 416 438 416 438 0.97 10 19 4.5e-06 0.00039 21.0 0.4 1 23 460 482 460 482 0.98 11 19 6.4e-05 0.0056 17.4 0.6 1 23 488 511 488 511 0.92 12 19 6.9e-05 0.0059 17.3 0.6 2 23 521 542 520 542 0.97 13 19 0.11 9.8 7.2 0.2 2 23 549 571 549 571 0.89 14 19 0.00063 0.055 14.3 0.7 1 23 576 599 576 599 0.92 15 19 0.0053 0.46 11.3 3.6 1 23 610 633 610 633 0.93 16 19 5.6e-05 0.0049 17.6 0.1 1 23 640 662 640 662 0.98 17 19 2.8e-07 2.5e-05 24.8 0.4 2 23 669 690 668 690 0.97 18 19 2.6e-06 0.00023 21.8 0.3 1 23 696 718 696 718 0.97 19 19 0.02 1.7 9.5 1.3 1 23 724 747 724 747 0.96
Sequence Information
- Coding Sequence
- ATGAACGGCGACTCCTTACACGAACTGCTCGATCTCCTCGACGGCGATTGCTTCCTCCAGAACATCCACATCCAAGAGATAGAGGAGCAGCTCTTCATACCGAAGAGTAGACCTCAAGTGAAAACGGACTATACGAAGCCTCAAGAGCTTAAGCTCGATTGCTGTCCGAAAAGTCCGCAGGGTTTCAAGAAGGGTTGTGGCTTCGAGACCGCGACCGACGCGACGTGTAAAAGGCCGCAATCGATCGTCCCGTGTCACAAGTTACAGTCGTGTAAGAAACCGATAGCCGCATGCGGCGATAAGAGACCGCAGTCGAGTTACGCGCGTGGCGATAAGAAGCTGCAGTTTTTCGGCGTCGACGGTGATCAGCGAGCTATCGGCGTGTATCAAAATCCCGGCGGCGTTCACGACGAGATCGACCGGCAGCGGTCTGCAACATCAGAGCCGGATCGCGGAGACCGATCGCAGTCCGTCGATCAGGAACGGACCGCCGCCGCGTCCGAAGAGCGGCACGTGGTCACTAAAACCGCCTCTttcacgtgcgacttgtgctcgaaaccgttccgcacgcggaagtacctcaagaagcacctctcgatccacacgtcggaacgcggcttcgcgtgcggcacgtgcggcaagtcgttccgtctccgctacaagttgaccgagcacgagaagacccactcggagccgcagttccagtgcgaggtgtgctctgcgatgttccgtcatcgttcccatctcaacgcccacaagaggaagcgacacgagggcgtcgtcgccgccgctgccgccggcgacaaagtccctttggtgtgcgagctctgcggcaagaccgtctcgagcctgtccgcgttgaaggagcacaagtcgacgcacgagtcgcacgagtcgccgcacgcgtgcgccgcgtgcggcaagacgtacgcgtccgcccgcagcctcaggaaccactcggcgctcgctcattcggcgagccgcacgcggcgccacgcgtgccgcgtttgcggcaagtccgtcagcgggcgagcagtgctcgaagtgcacttgcggctgcacaccggcgagcggccgttcgcgtgcgccgcgtgcggccgctccttcgcctccgtcgagtacctgcggagccacgagaggacgcacacgggcgagaagccgcacgagtgctccgcgtgcggcaagaggttcgcgcagcggaccgcgttgacggtgcacgtgcgagggcatacgggcgagaagccgcacgtgtgcggcgcgtgcggcaggggattcgtgaccaagagccacctgatgactcattacaggacgcacgatagcggcggcggGGTCGACATCGAATATATCTCGAGGGGGTTCGTCTCGGGGCGGGTGCGCTTCTCCTGCGACCGGTGCGGTAAACCCTTCGTTACGGCACGCAAGCTGCGTAAGcacgtcgcgacgcacgacgcgtcgcgtccgttcgcgtgcgactcgtgcccgaaacgcttcaagcggaaatacgatctgtccgtgcaccggagcggcgtccacggcggcgacgtcgtcgtcgtcgtcgtcgagtgcgaggtctgctcgaagaggctgaaatcgaggagctcgtacgccgtccacatgaggcggcacaccggcgagtacgccgagaggtgcgagccgtgcggcaggggcttcgtcaccaggcaggagtacctgaaccacgtcggctcgaggcacggcaatagcgcgcacgtgtgtaacgtgtgcggcaggagttgttacgacaaggcggccctgcagGGCCACTTGGCGGCTCGTCATTCGGACGGCGGCCTCGCCTCGaagccctcccaccgttgcgagcactgccccaagacgttcctgcgggagaagtacctgaggcagcacgtcgtacgcatccacaaggacggcggacaacgctacatctgcgaccagtgcggcaaggacctgcgctcgaggggcagcctcagggaccacatcctcgtccacgacggcctcaagccgttacggtgtccggagtgcggcaggggcttcgctttgaggagcaccctcaagtcgcacatgcgcacccacaccggcgagaagccgtacgcgtgcgacacgtgcggcaagaggttcagccagcgggggccgctcaaggtgcacatgctgtaccatacgggggagaggccgcacaagtgcgacatatgctcgatggggttcgtcacgaggaacctcgcgagcaatcacgtcaagaggcagcacggtgccgtctag
- Protein Sequence
- MNGDSLHELLDLLDGDCFLQNIHIQEIEEQLFIPKSRPQVKTDYTKPQELKLDCCPKSPQGFKKGCGFETATDATCKRPQSIVPCHKLQSCKKPIAACGDKRPQSSYARGDKKLQFFGVDGDQRAIGVYQNPGGVHDEIDRQRSATSEPDRGDRSQSVDQERTAAASEERHVVTKTASFTCDLCSKPFRTRKYLKKHLSIHTSERGFACGTCGKSFRLRYKLTEHEKTHSEPQFQCEVCSAMFRHRSHLNAHKRKRHEGVVAAAAAGDKVPLVCELCGKTVSSLSALKEHKSTHESHESPHACAACGKTYASARSLRNHSALAHSASRTRRHACRVCGKSVSGRAVLEVHLRLHTGERPFACAACGRSFASVEYLRSHERTHTGEKPHECSACGKRFAQRTALTVHVRGHTGEKPHVCGACGRGFVTKSHLMTHYRTHDSGGGVDIEYISRGFVSGRVRFSCDRCGKPFVTARKLRKHVATHDASRPFACDSCPKRFKRKYDLSVHRSGVHGGDVVVVVVECEVCSKRLKSRSSYAVHMRRHTGEYAERCEPCGRGFVTRQEYLNHVGSRHGNSAHVCNVCGRSCYDKAALQGHLAARHSDGGLASKPSHRCEHCPKTFLREKYLRQHVVRIHKDGGQRYICDQCGKDLRSRGSLRDHILVHDGLKPLRCPECGRGFALRSTLKSHMRTHTGEKPYACDTCGKRFSQRGPLKVHMLYHTGERPHKCDICSMGFVTRNLASNHVKRQHGAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392046;
- 90% Identity
- iTF_00392046;
- 80% Identity
- -