Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.2 2e+04 -4.0 0.3 21 28 55 62 53 66 0.54

2 9 0.00013 0.37 11.2 0.1 17 40 116 136 99 139 0.80

3 9 0.018 50 4.3 0.1 18 34 145 160 141 168 0.76

4 9 3.1e-05 0.085 13.2 1.0 18 41 173 193 162 195 0.87

5 9 0.0086 24 5.4 0.2 17 39 200 219 194 226 0.79

6 9 0.012 34 4.9 0.3 19 38 230 246 225 250 0.87

7 9 0.0037 10 6.5 0.2 16 40 255 276 251 279 0.85

8 9 0.098 2.7e+02 2.0 0.1 18 40 285 304 283 311 0.87

9 9 0.00074 2.1 8.8 3.8 3 41 299 333 297 335 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.2	2e+04	-4.0	0.3	21	28	55	62	53	66	0.54
2	9	0.00013	0.37	11.2	0.1	17	40	116	136	99	139	0.80
3	9	0.018	50	4.3	0.1	18	34	145	160	141	168	0.76
4	9	3.1e-05	0.085	13.2	1.0	18	41	173	193	162	195	0.87
5	9	0.0086	24	5.4	0.2	17	39	200	219	194	226	0.79
6	9	0.012	34	4.9	0.3	19	38	230	246	225	250	0.87
7	9	0.0037	10	6.5	0.2	16	40	255	276	251	279	0.85
8	9	0.098	2.7e+02	2.0	0.1	18	40	285	304	283	311	0.87
9	9	0.00074	2.1	8.8	3.8	3	41	299	333	297	335	0.84

Coding Sequence: ATGCTTACGTGCGGCACCAGCAAACAGGGCAATCCGCCTTGTGTCCAGCCAACCTCTGCGAGCGCCTACTTACAGGGCGATCCACCTCGTTCCCCGGACGACCTCCGCCTCCCGCACGCATCCGGCGGCTTCCACGACCCGCTGGTCGGATCGCTGAGGAATATCTGCCAGCGATGTACGTCGCGCTACGAACGCTTCCATGGCTACATTGACCGGTGCAAGAGCAACGAGACCATCGTCGAGTCGATCCTCGCCGCCGTCACGATCAAACCTGAACCACAGATCGACACCGAGTACCACCACCCGATCAAGACGGAGGGATCGACGCTCGCCGATCCCTCCCGACCGGAgtgcccgcactgcggcaagaccttcgcccgttcgagcgcgctcctcgtccacctacgcctccatacgggcgagagaccgttcgagtgcccgcagtgcggcaagacgttcgcccgttcgaacgacctcaacctacacatgcacgtccacacgggcgacaagccgttcgcgtgtccgcactgcgacaagacgttctcgcagtcgtcgaacctgaagagccacgtgcggacgcacacgggcgagaaaccgttcgagtgtccgcactgctacaagacgttcgctcggcccggcacgttgaagacccatctaccgatacacacgggcgagaggccgttcggttgctcgaagtgcgacaagacgttcgcccggtccggcaacttgaggagccacgagcgggtccactggggcgaggagcgtttcgaatgtacctactgcgacaggacctacgctcacttcagtacgttgaagatccatctgcgggcgcactccggcggtgaacctttcaagtgttcgagctgcggcgagaccttcgcctcattcgatcgtctcaaggatcacttgcgggttcacgacgacgcgaagcgtttcaagtgttcacagtgcgataaggccttcactcaatcgtgtaacttgaggaggcacttgcggaaacataaccagtga
Protein Sequence: MLTCGTSKQGNPPCVQPTSASAYLQGDPPRSPDDLRLPHASGGFHDPLVGSLRNICQRCTSRYERFHGYIDRCKSNETIVESILAAVTIKPEPQIDTEYHHPIKTEGSTLADPSRPECPHCGKTFARSSALLVHLRLHTGERPFECPQCGKTFARSNDLNLHMHVHTGDKPFACPHCDKTFSQSSNLKSHVRTHTGEKPFECPHCYKTFARPGTLKTHLPIHTGERPFGCSKCDKTFARSGNLRSHERVHWGEERFECTYCDRTYAHFSTLKIHLRAHSGGEPFKCSSCGETFASFDRLKDHLRVHDDAKRFKCSQCDKAFTQSCNLRRHLRKHNQ

Sequence clustering based on sequence similarity using MMseqs2