Basic Information

Insect: Crossocerus cetratus
Gene Symbol: ush
Assembly: GCA_963675795.1
Location: OY776664.1:23638663-23643146[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0052 0.46 11.2 0.0 3 20 264 281 262 283 0.92

2 8 3.9e-05 0.0034 17.9 1.3 1 23 313 335 313 335 0.98

3 8 0.088 7.8 7.3 1.6 3 20 375 392 374 394 0.93

4 8 0.011 1 10.1 4.6 2 21 609 628 608 629 0.94

5 8 0.051 4.5 8.0 0.0 3 20 657 674 655 676 0.91

6 8 0.043 3.8 8.3 0.0 2 23 715 736 714 736 0.95

7 8 0.0081 0.72 10.6 1.4 1 23 742 764 742 764 0.99

8 8 0.086 7.6 7.3 0.5 3 21 865 883 864 884 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0052	0.46	11.2	0.0	3	20	264	281	262	283	0.92
2	8	3.9e-05	0.0034	17.9	1.3	1	23	313	335	313	335	0.98
3	8	0.088	7.8	7.3	1.6	3	20	375	392	374	394	0.93
4	8	0.011	1	10.1	4.6	2	21	609	628	608	629	0.94
5	8	0.051	4.5	8.0	0.0	3	20	657	674	655	676	0.91
6	8	0.043	3.8	8.3	0.0	2	23	715	736	714	736	0.95
7	8	0.0081	0.72	10.6	1.4	1	23	742	764	742	764	0.99
8	8	0.086	7.6	7.3	0.5	3	21	865	883	864	884	0.92

Sequence Information

Coding Sequence: ATGCTCGTCTCCCGGCAACCCTTCCAGAGACTCTGGCATCGCTTTCACAGTGTCGACGAAGGGGAGGATGAGGAATGGAGCGATTCGGAGAAGACACCGTCGGTGAGCAGCGGTGTGGAAGGCGGCGGATCGGCGGTCTCGAGCCCGGTCGCACCAGCCGGCGATGATGAGTCGAGCCTGCCGCCGCCTCCCAGACTCAACACCTccgccgccctcgccgcgATCGTCAACGCCGAGGATATCAGGCTGAGACTCGGAGTACTACCCGATGAGGCGAGGAAGCGGCTTGCTAGTCTTACCGAGGACATCGAGGTCGCCCGAGCGGCCAAGGACCGCCATGGAGGCTGCCGGCCGAGGGAGTCCAGTCCAAAGGACACGGACGAGGACTCGGGGATGGTGGTCGTCAAGGAGGAGGACTGCCAGCCGAGgccgtcctcctcctcgtcctcctccacgAGGAGAAGGGACTCCGTCTGCCGGAGGGACTCCGAGGACTCGAGCAGGCGGTCAGCCTCCGACGAGCCACCCCCCGACGCCAAGAAGATGAGGCTCGACGACGAACCTGTACCAAGACTGAGACTCAATGCTAGTCTGGCGACCGATCCTGCCCTTCGGCCCGCCACCGTAGCCGCGCTTACTGTCAAGCCGGAGAATACCTCGCCGCCGAATCCCGTCCCACCTCTGCCGGCTGGCCTGCAAAATGCAATCGCCTCGGGCCGGCTGTTCGTGCTGCCGACCGACGGGAAGGAGACGATCACGGTGGAGCCGGCGAGGCCGGCGCCGCTGATTTGTCCGCCCTGCGGCATCCGGTTCAGCTCGGCGAGCACCCTCGAGGCCCATCGCACCTTCTACTGCGCGCACCGGCCTCGCCTCGAGGAGGACACGACgaacgacgaggacgaggagaagTCGACCAAGTTCGACACGAGGAAGGCGTACGCCTGTCCCCATTGTTCCTACAGTGCGGACAAGAAGGTCTCGTTGAACAGACACATGCGGATGCACGCGGCCTctccggccgcgccgccgacgaTGCCGGCCGTCCCGACGGCCGCCGCTGCGCCCGCCACCGGCACCACCACtgcctccaatggatccttgAACGAGGAGGCCGAGCGCTACTGCAGGAACTGCGACATCAGGTTCAGCTCCTTGAAGACGTACCGGGCGCACAAGACCCATTATTGCAGTACCAGGCACGTGGTGAAGGACACGCCGGCCGCGAGCAACGCGCCGTCCTCCTCGGTGAAGGCGTCGCCGCCGACGAGCTCCAGTCCCGGGGACTCGCCGCCCCCTCAGCCGTGTCTCGCACTGCCAACCAATCCTATTTTGATCGTCCCGTACTCCTTGTTCCGCAGTGCCAGCGTCCTCGCTGCCTCGGCACTTCCTGCACCCGACACGGCTTGCTTCCTgcttccaaatgGCTCTCTACAGCCGATGTCAAGGGGCCTCGCGGCCACGGCCCAGAACGCGGCCGTGGTCGAGCCCCCGGCGGTCCTGCGAGCGGCGAACAAGCCGTCGACGCCGGCGGTGGCCGTGTCGACGTCGCCGTCGGTCGCGGCGCCGCTCGACCTCAGTATACGAAGGTCGCCGGCTCACCAGGACGAGAAGGAGAACAGGATATCACCGGTGCCACCTTCCCTCCCGCCGCCCCCTGGTAGTCCGCGGTCAAGGGGCAGTGCTAGTCCCAGAGCACGATCTATCGGATCGAGCCAGGCAGCCCCTGGTGGTGTACCACCGGCGCCTCCAACGGAACTTGCTCTCCGATTGGCGGAACTGCCGCCGCCACCTGTTCCTGGGGTTCTCGTTAAGCAAGGGGTCTCCAAATGCAAAGAATGCAACATTGTTTTCTGTCGGCACGAGAACTTCGTTGCCCATAAGAAACACTACTGCCAGGCACGAGAGACGACAGTGAGCAGCAGTCCCCCGCCGCCCGGAACACCCTCGCCGCCTCTCGTCCAGCTGATCTGCGCTGCTTGCGGCATTAAGTTCGCCTCGATGGACAATCTCGCGGCTCACCAGGCGTTCTACTGCCCGAAGAGGCCCGAGCCCCAGGAGCATCACACGCGATGCTCCAAGTGCAAGGCGATAATCGAGTCCGGAAGCACGCACACTTGCACGGGCGGGGCGTCGGGTGGATGGAGGTGTCCAGTCTGCGGGGCGATTAGCCCGACAGCCGGCGCGGCTCAACGTCACATGGACGCTCATCAGGGTGTCAAGGCTTTCAGATGCACGATCTGCCGTTACAAGGGTAACACGCTGCGCGGCATGCGGACGCACATTAGGATGCACTTTGACAAGCGCAGCACCGACCTGCAGGAAGAGAATTACATAACGTGCATCCTCGACGACGAGGCGGTCATCCCCACGCCCGAGCCCCCGCCAGCCACCACCCCCGAGGAGGTACCAGCGGAGGTCCAGGtgaacgggaagagcgaggttCGAAAAAGCCCGCAGCCACCGCCACCCttgccgccgcctccgccgcagccgcaggcGCAGCCGACGGTCACCGGGAAGGTGAAGCAGGAGCGGGAAGACACCCCGCCCCCGGAGGAGAGTCTCGACCCCAGCAAGACCGGGCCGAGGTATTGCCGATCGTGCGACATCAGCTTCAACTATCTCAGCACCTTCATAGCCCACAAGAAGTTCTACTGCTCCAGTCACGCCGGCGAGGCGAGcaacaacaataacaacaacaacaacaactcgagcagtcacgcgacgaCGCCGCCGAGCGGCCGCACCGAGGCCTCCGTACTTTAG
Protein Sequence: MLVSRQPFQRLWHRFHSVDEGEDEEWSDSEKTPSVSSGVEGGGSAVSSPVAPAGDDESSLPPPPRLNTSAALAAIVNAEDIRLRLGVLPDEARKRLASLTEDIEVARAAKDRHGGCRPRESSPKDTDEDSGMVVVKEEDCQPRPSSSSSSSTRRRDSVCRRDSEDSSRRSASDEPPPDAKKMRLDDEPVPRLRLNASLATDPALRPATVAALTVKPENTSPPNPVPPLPAGLQNAIASGRLFVLPTDGKETITVEPARPAPLICPPCGIRFSSASTLEAHRTFYCAHRPRLEEDTTNDEDEEKSTKFDTRKAYACPHCSYSADKKVSLNRHMRMHAASPAAPPTMPAVPTAAAAPATGTTTASNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTPAASNAPSSSVKASPPTSSSPGDSPPPQPCLALPTNPILIVPYSLFRSASVLAASALPAPDTACFLLPNGSLQPMSRGLAATAQNAAVVEPPAVLRAANKPSTPAVAVSTSPSVAAPLDLSIRRSPAHQDEKENRISPVPPSLPPPPGSPRSRGSASPRARSIGSSQAAPGGVPPAPPTELALRLAELPPPPVPGVLVKQGVSKCKECNIVFCRHENFVAHKKHYCQARETTVSSSPPPPGTPSPPLVQLICAACGIKFASMDNLAAHQAFYCPKRPEPQEHHTRCSKCKAIIESGSTHTCTGGASGGWRCPVCGAISPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFDKRSTDLQEENYITCILDDEAVIPTPEPPPATTPEEVPAEVQVNGKSEVRKSPQPPPPLPPPPPQPQAQPTVTGKVKQEREDTPPPEESLDPSKTGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNSSSHATTPPSGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01255959;
90% Identity: iTF_00633898;
80% Identity: -