Ccet003856.1
Basic Information
- Insect
- Crossocerus cetratus
- Gene Symbol
- -
- Assembly
- GCA_963675795.1
- Location
- OY776663.1:9099560-9100756[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.4e-05 0.0057 17.2 0.3 2 23 72 94 72 94 0.96 2 10 4.5e-05 0.004 17.6 0.3 2 23 126 148 125 148 0.95 3 10 5e-05 0.0044 17.5 1.3 1 23 152 174 152 174 0.98 4 10 2.6e-05 0.0023 18.4 3.2 1 23 180 203 180 203 0.97 5 10 1.8e-05 0.0016 18.9 0.8 1 23 210 233 210 233 0.95 6 10 3.6 3.2e+02 2.2 0.2 3 13 240 250 238 253 0.82 7 10 4.2e-05 0.0037 17.7 2.3 1 23 268 290 268 290 0.96 8 10 0.00089 0.078 13.6 0.2 1 23 294 317 294 317 0.95 9 10 0.021 1.8 9.3 3.4 3 23 323 343 322 343 0.98 10 10 1.1e-07 9.8e-06 25.9 1.1 1 23 349 371 349 371 0.99
Sequence Information
- Coding Sequence
- ATGACTGGCTGTTTCAGGAAGTCAGCGATTGCAGCCAAGGATGAAACAGCGAATGCTGTCCCACCACAGATTGTTATAATATATCACGGATTCCCAGTAAACCAAACTAATCCTGAATTAGGGACGACTGTTGAGAAAAAACTGGGAACACCGCCGGAGCCGCCTAATATCGAAAAGGAGGATGTGGATCAAATTCTGGGCAATCTTCGAAATACCTGTCCACTGTGCGAAAAAGAGTTCAAAGACGAGAAGCAAGTGGAGAGACACGTTCGAAATGTTCATCAGAACGCTCAATCACTCGGATCGCAAACACCCAATTGCACGGTCGACTCATCGAAAGAAGAAGTCGACCAGATGCTGGAAAAGTTACGCGACACTTGCCCGTTCTGTGAAAAACGCTTTAGAGACGAGAAGCAGGTGGAAAGGCATGTGCGAGCCATTCACAAAAGGCCGTATAATTGTGACAAGTGTAGGAGATCGTACTTCACTAGCTGGGCATTGGAGGAACACCAGAAGACGCACAGCAACGACTTTTATTTCGAGTGCCCGGTGTGTCATCTCAAGTACAAACGCAAGGAAGGACTGAAGCATCATCAGATACGAGTTCACAGTGATCTGGATCCAAAGTTTATGTGCGACCACTGTGGGAAGCGGTTCAAACTGAAGGTTGACCTGCTTTTGCACATAGGCAGAGCGCATATGAATAACATTCAAATCTGCCGGTTCTGCGGGAAGGCGGTGAAGGATCTCACCCATCACGAATGGAGGCACGAAAAGATTGCAAAGAAAGTCAGCTTCAATTACGCGTGCCACCTATGCCCGAAGAAGTTTCGCACAAACACGAAATTGGATAATCACCTGCTACTACACAAGGAGGGCTTTAAATGTGAGTTGTGCAATGAGGTCCTGCGGGGACCAGCACAACTTGTCCGGCACAAGCAACAAAAGCACAAGCCGGGCATGTTGTGTACAATTTGTGAGAAGACCTTCCAGTGCCGAAGTAACTTCTATCAGCACGTGTTGACTCACGAAGGTGTGAGGCCATATAAATGTGATGTCTGTGGAGAGGACTTTACACAGCGATCCAGCCTTCTCAGGCATCGGAGAAATCATCCTGGACCATTACCGCCTCTAAATACCGCGACGCGTATTGCGGACATAGCAAGGAGTATTTTGGCGAAAGCTCTAAATGCATGA
- Protein Sequence
- MTGCFRKSAIAAKDETANAVPPQIVIIYHGFPVNQTNPELGTTVEKKLGTPPEPPNIEKEDVDQILGNLRNTCPLCEKEFKDEKQVERHVRNVHQNAQSLGSQTPNCTVDSSKEEVDQMLEKLRDTCPFCEKRFRDEKQVERHVRAIHKRPYNCDKCRRSYFTSWALEEHQKTHSNDFYFECPVCHLKYKRKEGLKHHQIRVHSDLDPKFMCDHCGKRFKLKVDLLLHIGRAHMNNIQICRFCGKAVKDLTHHEWRHEKIAKKVSFNYACHLCPKKFRTNTKLDNHLLLHKEGFKCELCNEVLRGPAQLVRHKQQKHKPGMLCTICEKTFQCRSNFYQHVLTHEGVRPYKCDVCGEDFTQRSSLLRHRRNHPGPLPPLNTATRIADIARSILAKALNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01498382;
- 90% Identity
- iTF_00633823;
- 80% Identity
- -