Ccet013162.1
Basic Information
- Insect
- Crossocerus cetratus
- Gene Symbol
- -
- Assembly
- GCA_963675795.1
- Location
- OY776668.1:17031334-17034414[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.5 4e+02 1.9 0.7 6 23 259 276 256 276 0.91 2 13 0.0005 0.044 14.4 0.4 1 23 281 304 281 304 0.96 3 13 0.00073 0.064 13.8 1.8 3 23 318 339 317 339 0.96 4 13 0.032 2.9 8.7 1.0 3 23 352 372 352 372 0.96 5 13 8.6e-08 7.6e-06 26.2 1.5 2 23 416 437 415 437 0.97 6 13 0.0043 0.38 11.4 0.5 1 23 442 465 442 465 0.93 7 13 0.78 69 4.3 2.2 2 23 536 557 536 557 0.97 8 13 2.3e-05 0.002 18.6 0.6 1 23 566 588 566 588 0.95 9 13 2.7e-06 0.00024 21.5 3.1 1 23 597 619 597 619 0.99 10 13 0.023 2.1 9.1 3.1 1 22 627 648 627 648 0.95 11 13 6.6e-05 0.0059 17.1 0.8 1 23 674 696 674 696 0.99 12 13 0.16 14 6.5 0.0 1 23 758 781 758 781 0.97 13 13 2e-06 0.00017 21.9 3.4 1 23 786 809 786 809 0.96
Sequence Information
- Coding Sequence
- ATGACGCTGTCTAACAAGTGGGAGAGCGCCTGCAGGCTTTGCTCCGAGGAGAGGAATGAAATGTTGTCAATCTTCGGCAACGAGGGCATGGAGCGTAAGGTCGTGCAAAAACTACGTGCTTGCTTGCCCGTCCTCGTCTACAAGACAGATCCACTGCCAAAACAGATCTGCCAATTTTGCGCTGCCAGGCTCGACGATGCTTATGAGTTTCGCGAGTACTGCTTGAGTGTTTATAAGAGTATGCATCAGAAGTTATTGACACGCAAGGACGTAGAGTCCGTTCAAATATTCTTGGACGCCATGAAGAACTCCCCAGACCCTTGCCAAGCTCAGCTTTGGGCAGAAAAGGCAAGAGCACCGCCACCTTTAGTTCCTCTGCCTTCCTCGTTGCCAGCTGAGACTAAGTTCGTACTCAAAGAAACCAAACCTCCGAGTCATATGAATCATTGTATTGAGGCATTGCCCGAGTTACCATGCGAAGTAGAAATCAAAGAAGAGAATGCCGAGCCAATTCTCACAAAGAGAGTAATGTTGTGTAAGCCGGAGGATATGAAGATTGCTGAATCATTTAAAGCAAGTACAGTCACGGAAAATGGCATTCACCATTTGCAAAAGGCAGATGATATAAGTAAAGAATCAGAAGAGACTCATATAAATACAGAGGGGAAAAAGACCAGTATTTTAGAGCAAGTTTTGACAGGTAATTTAACAATAAATGACAGGAAGGATATCAAAGGGAAATCGAGATTAAGCTCCAAGTGGTGGTGCGCTCCTTGCAATTGTTACTATAAATCCAAAGAAATTCTAATGGAACATATGCAATCGCACTGTCCGCGAAGGTACAGCTGTAAAAAATGTTCTATATCATTTGAGTCTGTTAAACAATTGGCAAAACACGAAGCAACTGATCATATGAAGGTAGCAGTGGATTGCGATATAAATGTAAATGACTGCCATCAATGTGATAGGCAGTTTGTGAGTTTGGGAATGTTAAAACAACATAGGTTACGGGATCACTTAGCAAAGAATGTTGAAATTGGAATCAATACGTGGTGCTCATTGTGCAATAGATTTTTCTCGAGTATAGAAGCTTTTCAAAGCCATTCGCAATTACATTCAGTCATAGCTCGAGCAGATGATACTGTACCGTTACCGATTCATCCAGTTACTGCTACAGTTCATCAAACAGAGGAAGCTACAAAAGAAATCAAAAAAGTCCAATTTTCTGATGTTGTTAAATCCCTTACTTGCCCTACTTGTGGGAAGGTTTGCACACAGCAGAGTGCATTATCAAACCATATGCGCACTCATGAGCCGAAGCGGCATAAGTGCGACATTTGCGGCCGCTCCTTCGGTCTATTTATTCGTTTAGCAGCACATAGAATGAGTGAGCACAGTCAGCAAGCAAATATGTCACCACTTCTGGCAAGTGTTGAGCATGAGGAAGCCCTTAACGCAGAACGAGAAGCGAGGGAAGCAAGAAATAGACTAGCGAGAAGCAGAAGGTACTCAGAGATCGCAGAGAACGATGGCACAACTAAGATTGACGAGCCACCTGCGAAACAGAAAAATATACAGAATGAAAACACATTAAAGAATGTAGCAAGATGCGGAATATGCCGGCAATGGTTTAATGATCACACCACCATGCTCACGCATCTTCAGACACATTCGGATACTTATAGTTGTAAAAACTTTACTTGTGATATATGTAAAAAGTCATTTAAGGAGAGATGGCAATTATTACGGCACGAGGTAGTACATAAACGCAGCGTACGAGTATCTATATATAAGTGTAAGCTATGCAATAAAACGTTTGTTGATAAGAACACATTCAAGGTGCATCAGAAAGTGCACACAGAGAAATCATCTTTTGTATACCACTGTTCAAAGTGTAACAATGCCTTTTCCAAAGAAGTTTCTCTCTTAACGCACCAGTGCACAACTCAGACGTTTACTAAGAAAGGAGTTTCATTCAAATTGCCGCAACGCCATTCAAGTGCAGGAAGCGCTAAAAAGTATAAATGTGCAAAGTGTAATGAATTTTTCAGCACTCCACAAGCAAAGATTATCCATATGAAAACTCACACTGAAAAGACTCGTACGGGAAAACAGAAGAACCCGGTACAATTGGAAGATGAAGGAATGCCGACATTAAGGGCTGAGACATCTGCGGATTGTACAGTACCATCCACCGAGCCAGAGGTTGAGATCAGTGAGGAGAGTACACCCGCTCCCATTAAGCGAACGCTTATAAGATCGGCTGGCGGATACCGATGTGGCGTATGTCAATCACCGTTTGTATTACGGGAGTTAGCAGTGGCGCATCTGCGTTCTGCACATCCTGTAATGCCTTATCAATGCCCATACTGTAAAGAGCGATTTACAACCCAGTATATGTTCACACACCACATGAAAGCAGCCCATCCCAAGGAACCGGAGAATTAG
- Protein Sequence
- MTLSNKWESACRLCSEERNEMLSIFGNEGMERKVVQKLRACLPVLVYKTDPLPKQICQFCAARLDDAYEFREYCLSVYKSMHQKLLTRKDVESVQIFLDAMKNSPDPCQAQLWAEKARAPPPLVPLPSSLPAETKFVLKETKPPSHMNHCIEALPELPCEVEIKEENAEPILTKRVMLCKPEDMKIAESFKASTVTENGIHHLQKADDISKESEETHINTEGKKTSILEQVLTGNLTINDRKDIKGKSRLSSKWWCAPCNCYYKSKEILMEHMQSHCPRRYSCKKCSISFESVKQLAKHEATDHMKVAVDCDINVNDCHQCDRQFVSLGMLKQHRLRDHLAKNVEIGINTWCSLCNRFFSSIEAFQSHSQLHSVIARADDTVPLPIHPVTATVHQTEEATKEIKKVQFSDVVKSLTCPTCGKVCTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRMSEHSQQANMSPLLASVEHEEALNAEREAREARNRLARSRRYSEIAENDGTTKIDEPPAKQKNIQNENTLKNVARCGICRQWFNDHTTMLTHLQTHSDTYSCKNFTCDICKKSFKERWQLLRHEVVHKRSVRVSIYKCKLCNKTFVDKNTFKVHQKVHTEKSSFVYHCSKCNNAFSKEVSLLTHQCTTQTFTKKGVSFKLPQRHSSAGSAKKYKCAKCNEFFSTPQAKIIHMKTHTEKTRTGKQKNPVQLEDEGMPTLRAETSADCTVPSTEPEVEISEESTPAPIKRTLIRSAGGYRCGVCQSPFVLRELAVAHLRSAHPVMPYQCPYCKERFTTQYMFTHHMKAAHPKEPEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00633835;
- 90% Identity
- -
- 80% Identity
- -