Ccet011779.1
Basic Information
- Insect
- Crossocerus cetratus
- Gene Symbol
- -
- Assembly
- GCA_963675795.1
- Location
- OY776667.1:19271840-19276111[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.2 1.1e+02 3.7 7.7 2 23 264 286 263 286 0.97 2 20 0.025 2.2 9.0 1.2 1 23 336 358 336 358 0.97 3 20 0.0062 0.55 10.9 0.2 1 23 407 429 407 429 0.96 4 20 0.0037 0.33 11.6 0.1 2 20 485 503 485 505 0.93 5 20 0.48 42 5.0 2.0 1 10 517 526 517 537 0.79 6 20 0.0026 0.23 12.1 0.1 2 23 546 567 545 567 0.97 7 20 0.0011 0.1 13.2 0.1 1 23 612 634 612 634 0.98 8 20 0.00016 0.014 15.9 0.1 1 23 640 662 640 662 0.97 9 20 2e-05 0.0018 18.8 0.8 2 23 705 727 705 727 0.96 10 20 0.023 2 9.2 2.8 3 23 736 757 734 757 0.95 11 20 0.00011 0.0096 16.4 1.3 2 23 765 787 764 787 0.97 12 20 0.00099 0.087 13.4 0.2 1 23 795 817 795 817 0.96 13 20 0.051 4.5 8.0 0.5 1 20 872 891 872 891 0.97 14 20 0.00015 0.013 16.0 0.1 2 23 911 932 910 932 0.96 15 20 6.6e-06 0.00058 20.3 1.0 1 23 946 968 946 968 0.98 16 20 0.0022 0.2 12.3 1.8 1 23 990 1013 990 1013 0.96 17 20 0.56 49 4.8 1.9 2 23 1060 1082 1059 1082 0.92 18 20 0.0059 0.52 11.0 4.2 2 23 1110 1132 1109 1132 0.94 19 20 0.56 50 4.8 4.0 2 23 1178 1200 1177 1200 0.94 20 20 0.38 33 5.3 1.9 2 23 1232 1254 1231 1254 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGTTGTCGAGCCGCAAAATGTCGAGCGAGTCTGCAGGCTCTGTCTTTCGGGGAGCGGGCCGAGATCCTCGGTATTCGCCGCCCAGGACTCGCCGGTTTCTTTGGCCGCCAAGATACAGACCTGCCTCTCCATCCAGATTTCGGTCAGTGACAAGCTCTCCACAAGGATATGCGCACAGTGTGTGTTGAATGTGAACCAATGGCACAAGTACAAAGAGGCCTGTCTTAAGTCTCAGGTGAAGCTACAACAATGGCTTGACAAGCAGACCCAATCTGTCCCTTTGGTGGTGACCATTAAGGATGAACCGATCGACCTGGATTTTGATGACAATGTTGTAGAGGTAATCTCAAATCAATCAGATGTGGTAATTACTTGTTTGTTAAGGAAGCGGGTGCCAAATGTTAACCCAATTAACGGTATGGTGGATGATGGTCCACTGGAAGATTCCATCGATGCACTGCGCAACATTTCTAACAAAGATCACTCCACTCCATTAGTTAATCTGGTAGGACCATCAAGAAGTCCTCCACAATTGGAAAAGCAATTGTGCTCTACACCTCTCAATCCAAAAACCCACATTAACTTCAGTACAGACGGTACCACTGAAAATGAATCTGGATCCGGCAGTGAATTGAATGCGAAAAGTTTTGCAAGAAGGCGGGATATTACAATGGAAGCAGATTCTACTGAACTATCAAATACATCACTCACTTCCAGCGGTAAGAAGAAGATGAGACGCGGGCCGCACACGCACTTTAGGGGACAGATTAAATTTCGACAAAAATGCAAACATTGTCAGATCTATTTGCACTCCAAGTATAGCTTCTCAAATCACATGAAGAAGTTCCATAATGATAAATCTCCCGATGATACCGACACAACTCTACCAGATGATGAAGTGGAAGCGATTGAAGATGTGGAAGACGAAATAATAACTTTGGAGAACGAATCTCCACTGACACAAGTTCAAGAGAACATTATCGGCCAATTGAAAACATTCTCGTGTTACACTTGCGGATTGAAATTCATGAATCGCAAGGGAACACTGGTTCATATTCGCCAGCATATGCCTGACCTTAGACCGTTCACTTGCATCGCGTGTTTAACAGAGTTCGCCGACCGATCCCTCTACAAAATACATTGCGGATCTTCCTTCGAGTGCGCGATGAAAATCGCACTAGTTGTACCTAAGAAGGGCGAAGAGCTATACTTCACCTGTAACATGTGCCTGCGAACAGTGGCTAATCGTAAAGAATTACTGAATCACCTAGCAGAGCATTCCGCCAAACAGTTTGCGAAACTAGCATCGCCTTCGCGATCACCACCGAAACTAGTGCCAATGTCACCCGTACGACCAAGAACGGAAACTATGAAAGAGAACTCTCAAGCGGCGAGTGCAAACATTCGTTACCCGTACATGAATGGTAACCTGCAGTACAATAACGTATGTGATTTGTGCGGTATGATTTACAAGCGCAAGACGAATATGATTAAGCATCGGGAGCTCTGCGCGCAGTTGTTACCGCAAGAAAGAACATCGTATACATGCGCTCACTGCGGCAGGACGTTCCTGGTGTTTAAGAAATTCCACACTCACTTGTCGTGCGACCACCAGATTAAAACGATGACTTGTAATGACTGTGGGGTGGTATTAACGACTAGCGCGGAGTTTCTGGCTCACTTTGAGACCCACCGAGGAAATAGGAGACAGCAGGCCAGTCAATCCGAAGACGCAACCACTTCACCTAGAACGTTGTCGCGTTCTATTGAGGATTGGGATTCATTTGAAGCGGAGATGAACTCGAGTAAAAGCCCCGATCAAAAGTACTCTTGCGCATTATGTCGCCAAGAGTTTGCGACTAAAGGTGAATTAGTTGAGCACAGGAATATCCACTTGAAAGTGAAGATATACTCCTGCGTGATATGCCGCAGCATGTTCAGCAGTGCGAGTGCACTCGAGGTGCACATGAAAGATCATGGTGTAACGGACTCGAATGAGAGAAACAACTCGGGTACCGCAGAGTATGAACGCCCGGATAACAGCTTGTTGAAATCAGAAATTTTGAACGGCAGTGCAGTGTCGGACGATGGAAATTCTAGTGAGAGCTGCAAATTCTGCGGCAAAACCTTTGCCAACCAAGCGAATGCGAGGAGACACGAAAGGAGCATTCACGCAGATATGATGAGCAGAACGATATGCACAATATGTTCGTCGTCATTTTCGACACCAAGTCATTGTGCGCGTCACGTGAGGCAAGTCCATGCACAAAATCGGAAGACGACACAATGTCCTCATTGTTCAAAGACATTTGTCTTAATGACAAATCTGAAGCTTCACATCGAAACAGATCACCGGGCTGAAAGCAGTAAAGGCTACGACTGTGACCTATGTGGAAAATCATTTGCCGCAGAAATTTCGATGAAGAAGCACAGGGCTTCGCATGGTCGTTATGGAGTCCGAAATGGTACCCAATCCCTAGGTGGAGTTGAACAGAAACCGCGGATTCTAATGAAACCAGAACAAGTTACAGATGCTTCTATCGAACGACCTGCGAAAGCCAGAAAATCCTTCCCTAATCCACCACCAGCCGTGTCATCAGGCAACTTCGAGTGCCAAGTGTGTCACGACAGGTTCCCCAATGTAACTGATCTTAGAAAACATCTGTGGGACGTACACTGCGCATTTAATAAACCGGAGAAGCTTCTCACCGATAATGAGCTTCAATGTGACATATGTTCTGCAGTCTTTTCTGACAAGCAGACTTTGAAAGTCCATGTGCAGTGGCACAATGCGAACCCAATACTCTCTGACATCTCAAAACCTTCCTTTACTTGCGACGTATGCGGTAAGAATTACAGCTCACAGAAGGGACTGCTAAGACATAAAAAGGTTCACGCAGCCAgcaccgtcgcttccatcAAATTCCAAAGCATCGCGAGAAAGCGTGTTCCAACGCAATTCATGTGCACCATTTGTCGCAGGAAATTTATTACCATATTATCTCTCCAGCGTCATAGAATGAACTTCCATGGCGACGCACCAAGTTCGCCACTACCAGAGGAGGTGGTACTCCAGGAACGAAGCAATTCAATCAGTGAGCCAACTCCGAAGAAGATGAAACTTGAAATGAATGATACAGCTGATCCAAGCAGCGTCAAAAAGTCGGTGATGTGTCATTTGTGCAAGAAGCTCTTTCCCAACTTCAGTATACTGTACAGGCACAAGCAGCAAGTTCACAAGCAAATCATGCCAAAGCAACGGGCTCCGCCTGCAGTCCTCCCCGAACTTGAACCGATTACTCAAAAAGATGGCACGATTTCCTGCAATATTTGCAAGAAGAACTGCGTAGAACTTAGTCACCTGCGAAGGCATTATACCATAAAACATTTAAGACCGCCAGTAAGAAAAGACCAGGAGGAGCCAGACGAACCCCCCAGGGAAGAGGTGATTAGTCAGACGAGATCGCCACCGAAAACGACCAAGACGAGGCGCCGCGTGTCGCATTACTCAAACGTGGTACTTTGTTGCACACTTTGTGATCAACATGTCTACACAAGGGAGGAAATGTCGAGGCACATTACGCGTCGTCACAACACAAACTATGACGCAACGGTCGACACCAATTTCCACAGGGAGGTTGACATTTCGACTTATACCGTCGACGGCGTTGATTTTAAATCTCAGGAATGTCCCCATTGTCGCATTAAATATCCCAACTTCAGAGTGTTGAAGGTTCACTACTTTAGGTTCCACGATGGTGCCGATGCAATGCGATAG
- Protein Sequence
- MDEVVEPQNVERVCRLCLSGSGPRSSVFAAQDSPVSLAAKIQTCLSIQISVSDKLSTRICAQCVLNVNQWHKYKEACLKSQVKLQQWLDKQTQSVPLVVTIKDEPIDLDFDDNVVEVISNQSDVVITCLLRKRVPNVNPINGMVDDGPLEDSIDALRNISNKDHSTPLVNLVGPSRSPPQLEKQLCSTPLNPKTHINFSTDGTTENESGSGSELNAKSFARRRDITMEADSTELSNTSLTSSGKKKMRRGPHTHFRGQIKFRQKCKHCQIYLHSKYSFSNHMKKFHNDKSPDDTDTTLPDDEVEAIEDVEDEIITLENESPLTQVQENIIGQLKTFSCYTCGLKFMNRKGTLVHIRQHMPDLRPFTCIACLTEFADRSLYKIHCGSSFECAMKIALVVPKKGEELYFTCNMCLRTVANRKELLNHLAEHSAKQFAKLASPSRSPPKLVPMSPVRPRTETMKENSQAASANIRYPYMNGNLQYNNVCDLCGMIYKRKTNMIKHRELCAQLLPQERTSYTCAHCGRTFLVFKKFHTHLSCDHQIKTMTCNDCGVVLTTSAEFLAHFETHRGNRRQQASQSEDATTSPRTLSRSIEDWDSFEAEMNSSKSPDQKYSCALCRQEFATKGELVEHRNIHLKVKIYSCVICRSMFSSASALEVHMKDHGVTDSNERNNSGTAEYERPDNSLLKSEILNGSAVSDDGNSSESCKFCGKTFANQANARRHERSIHADMMSRTICTICSSSFSTPSHCARHVRQVHAQNRKTTQCPHCSKTFVLMTNLKLHIETDHRAESSKGYDCDLCGKSFAAEISMKKHRASHGRYGVRNGTQSLGGVEQKPRILMKPEQVTDASIERPAKARKSFPNPPPAVSSGNFECQVCHDRFPNVTDLRKHLWDVHCAFNKPEKLLTDNELQCDICSAVFSDKQTLKVHVQWHNANPILSDISKPSFTCDVCGKNYSSQKGLLRHKKVHAASTVASIKFQSIARKRVPTQFMCTICRRKFITILSLQRHRMNFHGDAPSSPLPEEVVLQERSNSISEPTPKKMKLEMNDTADPSSVKKSVMCHLCKKLFPNFSILYRHKQQVHKQIMPKQRAPPAVLPELEPITQKDGTISCNICKKNCVELSHLRRHYTIKHLRPPVRKDQEEPDEPPREEVISQTRSPPKTTKTRRRVSHYSNVVLCCTLCDQHVYTREEMSRHITRRHNTNYDATVDTNFHREVDISTYTVDGVDFKSQECPHCRIKYPNFRVLKVHYFRFHDGADAMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -