Ccet008461.1
Basic Information
- Insect
- Crossocerus cetratus
- Gene Symbol
- -
- Assembly
- GCA_963675795.1
- Location
- OY776665.1:15672111-15674898[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00061 0.054 14.1 1.0 2 23 390 412 389 412 0.93 2 14 0.00023 0.02 15.4 0.4 1 23 418 440 418 440 0.98 3 14 1.2e-05 0.001 19.5 3.0 1 23 446 468 446 468 0.96 4 14 5.2e-05 0.0046 17.4 5.1 1 23 477 499 477 499 0.97 5 14 9.6e-05 0.0085 16.6 2.1 1 23 505 527 505 527 0.97 6 14 1.4e-06 0.00013 22.4 0.5 1 23 532 554 532 554 0.97 7 14 0.0041 0.36 11.5 2.3 1 23 561 583 561 583 0.98 8 14 0.0013 0.12 13.0 0.5 3 23 604 624 602 624 0.96 9 14 0.00036 0.031 14.8 1.3 1 23 631 654 631 654 0.96 10 14 0.0047 0.41 11.3 0.7 1 23 660 682 660 682 0.97 11 14 0.00037 0.033 14.8 3.6 1 23 688 710 688 710 0.98 12 14 9.1e-06 0.0008 19.8 5.9 1 23 716 738 716 738 0.98 13 14 1.7e-05 0.0015 18.9 0.8 1 23 744 766 744 766 0.98 14 14 0.0011 0.096 13.3 0.4 2 23 772 793 771 793 0.96
Sequence Information
- Coding Sequence
- ATGACCATAGTCTGTGCGGCAAAGAATTGCAAATACTCTTCGGACGCTGCGGACTCTTCACACGTTGTATTTATAAATTTCCCAAACGATGACACGTCAAAACTGTGGGCACATCACTGTGGTAGAACCGACTTGCTAATGAAGTCGAACGAGGAGATTCACTCGAATTATTACATTTGCTCCCATCACATAGAAGATCAATATTATATAAACAAAAGCGATCCAGTTATAATAGAGGAGAACGCTGTACCGACACTATTTGATGAAGATGCAGAGAGGGACAGTTGCAATATTTTTGATAGGAACGAGGAGGACGAAACCATGTCACTACCCTATTCTGACATGGATGTGGAAGTAGATCAATATCATGGCATCAGCGTTAGGTTTTCAAACCTATGCAGGATATGTGGAGAAGCAGCGATCAATGCGTTAGAAATTTTTAACGATAAAGGCATAAGACTGAAACTGAAAGATAAAATAAAAATGCACATGCCAATAGCAGTGGATATGGAGGATTTAATGCCACAGAGGCTGTGCGAGGACTGCTACAGCAAGCTGGAGATGATACATACTCTAACTGTGATTTGTTTAAAGACTGACATGAAGCTCAAAAGATTCTTAAATATAGCAGGAATTCCTCAATATGACAATAAGTACAATGCAATATTAGAAGAGTGCACTATTGATTTGGCTCAAGACATGTGTTTAGAGGAAGCACAGACTGAACAGCTAGACTTGCCAGGAGCAAAGATAGGAAGAATATGTAATAATTATGAGAATCCCACGAGCAACGAAGTTCAATCCTCCCTGGAGAATTTGTTAGACTGCTATACTAAAATGGGACAACAAAAAGCTGATAATTTAATCAAAGTTGGCAATACACATGAGATCACGGATGTGCAAGAAGATCAGGTGATCTCCCATTTGCACAGTCCCAATACATTCAAAAGGCAGGAAATTTTTAAAAACCATGAGATATTATGTGACGGGGAAGATATATTACTGCAGAAGGAAAAAGAAATCACTACTGATAATACTTTTGAAACGTCTAAAAATGTTGAAGGGAAACTGCAGTGTGATACGCTTGACCTGTTTAGTGGGAAAGACTTCAATCTGGATAAAGACGAAATTAACACTAGTTGTAATACAGAAATAAATAGAAGAAAGAGGTGTGGTCACTGTGATATAGTCTATCCTACTAAGAAAGAATTATTCAACCATATTACTGAGTCTCATGGGGGCCAATTATTGTTCAAATGTTTTACTTGTGATAAAACTTACGAGAAATGGTCTGGTTTAGATGTACACGAGGCTACACATAGGATAGACAAACCCTATCTCTGTGATCTGTGCGGCAAGAGATTCAAACACTCGAATAACTTAAGGGGCCACAAAAGAATTCACTTGGATGACTCTAAAAAGAAGCGTCATGTCTGCAACATGTGCGGAAATACCTTTCGATCGAGGTTCCATTTGCGAGAACACATGAACCAGCACGAGGGTAATACGCCCTACCCATGCGACCAATGTGGAAAAGCGTTCCACAAAAGAATACAATTGCGTCAACATAAATTGTCGCACGGCTTAAACAAGCACGTTTGCCCAGTATGTGGAGCGTCCTTCAATCGCAGGGGTAATATGACAGCACACTTGAAACGACACAATAATGCAGAAGAAGTGTATACCTGTAGTGTTTGCTCATTGAAGTGCAAGACTATGAGTGCACTGCTGCTGCACAGGAAAGTACATACGAAAGAAGATATTATAGATAGCATCAAGAGGAAAAGCTCCAGCAAAGTGATATGGGATTGCAAGATTTGCAACCGAGTATTTTCAAAGCGAACAGTGTTGCTGTACCACGAGCGGTTGCACACGGGCGAAAAGGTCGGCTTCGACTGCAACGAGTGCGACAAGAAGTTATCTAGCAAACAGTCTTTGATTTACCATAAAAAGAGCATCCACTCCACGGAGAGGTTGCACATGTGCCAGTATTGCGGTGACTCGTTTGTATCCAAGGAGGCGCGACAAATTCACGAGCGCGTTCACACCGGGGAGCGGCCGTACATTTGCAAAGTATGCAACATGCGCTATAAATGTTCGAGTAACTTGAACCAGCACATGAAAATTCATTCGGGCGTCAAGCCGCACCAATGCAGCTTCTGCCACAAAAGCTTCACGCGAAAGGATACGCTGAATGTGCACGAGCGAATTCATACTGGAGTTAAGCCTTTTCCTTGCGAAACTTGTGGTAGAAACTTTTCACAGAGGAACGATATGCTTAAGCATGCAAAAACCCATGAGTCGAAGGAGATGCGCTGCGAATTATGTAGCCAAGTATTTACGAGGAGAAAAGACATACTGAAGCATATTGCTTTGCACCAACAGACTAGTTCTGCCGTAGAAGAGTACGCGGGTGCTCAAGTTCAGATGATTTCTACTTCCACGGAGATAAGTTCAATCTAG
- Protein Sequence
- MTIVCAAKNCKYSSDAADSSHVVFINFPNDDTSKLWAHHCGRTDLLMKSNEEIHSNYYICSHHIEDQYYINKSDPVIIEENAVPTLFDEDAERDSCNIFDRNEEDETMSLPYSDMDVEVDQYHGISVRFSNLCRICGEAAINALEIFNDKGIRLKLKDKIKMHMPIAVDMEDLMPQRLCEDCYSKLEMIHTLTVICLKTDMKLKRFLNIAGIPQYDNKYNAILEECTIDLAQDMCLEEAQTEQLDLPGAKIGRICNNYENPTSNEVQSSLENLLDCYTKMGQQKADNLIKVGNTHEITDVQEDQVISHLHSPNTFKRQEIFKNHEILCDGEDILLQKEKEITTDNTFETSKNVEGKLQCDTLDLFSGKDFNLDKDEINTSCNTEINRRKRCGHCDIVYPTKKELFNHITESHGGQLLFKCFTCDKTYEKWSGLDVHEATHRIDKPYLCDLCGKRFKHSNNLRGHKRIHLDDSKKKRHVCNMCGNTFRSRFHLREHMNQHEGNTPYPCDQCGKAFHKRIQLRQHKLSHGLNKHVCPVCGASFNRRGNMTAHLKRHNNAEEVYTCSVCSLKCKTMSALLLHRKVHTKEDIIDSIKRKSSSKVIWDCKICNRVFSKRTVLLYHERLHTGEKVGFDCNECDKKLSSKQSLIYHKKSIHSTERLHMCQYCGDSFVSKEARQIHERVHTGERPYICKVCNMRYKCSSNLNQHMKIHSGVKPHQCSFCHKSFTRKDTLNVHERIHTGVKPFPCETCGRNFSQRNDMLKHAKTHESKEMRCELCSQVFTRRKDILKHIALHQQTSSAVEEYAGAQVQMISTSTEISSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00391366; iTF_00633803;
- 90% Identity
- iTF_00391366;
- 80% Identity
- iTF_00391366;