Basic Information

Insect: Crossocerus cetratus
Gene Symbol: Snai1
Assembly: GCA_963675795.1
Location: OY776664.1:5778920-5781891[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0091 0.8 10.4 0.1 1 23 252 274 252 274 0.95

2 12 2.5e-05 0.0022 18.5 1.2 1 23 282 304 282 304 0.98

3 12 1.9e-05 0.0017 18.8 0.2 2 23 312 333 311 333 0.97

4 12 1.6e-06 0.00014 22.2 0.7 1 23 339 361 339 361 0.99

5 12 8.2e-05 0.0072 16.8 2.1 1 23 368 390 368 390 0.98

6 12 4.1e-06 0.00036 20.9 0.6 1 23 396 418 396 418 0.96

7 12 1.1e-05 0.00099 19.5 0.2 1 23 424 446 424 446 0.98

8 12 5.8e-07 5.1e-05 23.6 1.2 1 23 452 475 452 475 0.96

9 12 3e-06 0.00027 21.3 0.5 1 23 481 504 481 504 0.96

10 12 1.1e-06 9.6e-05 22.7 2.0 1 23 510 532 510 532 0.99

11 12 7.5e-05 0.0066 17.0 0.4 1 23 538 560 538 560 0.94

12 12 0.00024 0.021 15.4 0.1 1 23 566 590 566 590 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0091	0.8	10.4	0.1	1	23	252	274	252	274	0.95
2	12	2.5e-05	0.0022	18.5	1.2	1	23	282	304	282	304	0.98
3	12	1.9e-05	0.0017	18.8	0.2	2	23	312	333	311	333	0.97
4	12	1.6e-06	0.00014	22.2	0.7	1	23	339	361	339	361	0.99
5	12	8.2e-05	0.0072	16.8	2.1	1	23	368	390	368	390	0.98
6	12	4.1e-06	0.00036	20.9	0.6	1	23	396	418	396	418	0.96
7	12	1.1e-05	0.00099	19.5	0.2	1	23	424	446	424	446	0.98
8	12	5.8e-07	5.1e-05	23.6	1.2	1	23	452	475	452	475	0.96
9	12	3e-06	0.00027	21.3	0.5	1	23	481	504	481	504	0.96
10	12	1.1e-06	9.6e-05	22.7	2.0	1	23	510	532	510	532	0.99
11	12	7.5e-05	0.0066	17.0	0.4	1	23	538	560	538	560	0.94
12	12	0.00024	0.021	15.4	0.1	1	23	566	590	566	590	0.94

Sequence Information

Coding Sequence: ATGACGGCTGATGCTGAGAAAGACAGTACTCACTGTCTGATTTGTAATAGCAAAGTGGGTGTATCGAGTAGGAATTGTATACGAATCTTTAATGAGGCATCTGTCACTCCGTCTGAGAAGCCACTTGTAGATACTATCTGTACTGTCCTAGAGACAGATCTGACGGAGGAGAATGTACATTCTCTTGTTCTGTGTAAGAAATGTTACAAGCTGTTCAATGAGGTAGATGAGCTTGAAAGTAGATTAGTCGAAATCAAGCTAGAGTTGTATAATAACTATAAGAAGACCATAAAGCAACTAACGAATATCAGTCAAGTCGAGGAGGAATATAATGACCATGACTACATTGACAATGGCGAAGACCAAATTCTGGAGGGGGAGTCGATATATGTGGAGGAATTGGAAAGGAGAGATGAGAGCCACGAGGAAGAAGAGAGTCAGGAGCATCAGGAAATGGAAGTAGAAACACTGCACCAAGAGGAACCAGAAACAATGGTGTCCGAGGACCAAGAACAGTTTATTAAAGTAGAGCTACAAGAAGCAGAAATACAAGAAGCCTGCAgtgcggaggaaaagaaaaagaCTAAAAGACAGAGAGTTTCAATGAAACCACCTGAACCTCCTCAGGAACAAATCGTATCCAGAGATGGTAGTTTGTATACTTGTCTGTTATGTTCGAGCGATGAAGATCGATTAACAGGCGATGCAAAATCCATTATTGCACACGCAAGAAGCGTGCATGATACTCGCTTGTACATATGCGACATATGCGGCGACGATTTTAGAAAACGAAACGAGCTGTCGCTTCATCTTGACGAGCACGTGGCGAAGGAAGAGGGCGACTTCCAGTGCGAAGTCTGCAATCGAATATTCAGTAATCTAAGACTTTTCCGAATCCATAAGAGAATACATTACCCGCAAGTGAAATCGTGGCCGTGTGAAACATGTGGAAAAAGATACAGCTCGAAGAATTTACTAGACGAACACATTAATACGCACACGGGAGTTCGACCGTATGTGTGTGAAAATTGCGGCAAAGATTTCGCGTCGAAATATACTTACAAGGCGCACGTGAAAACGCATGAAGTTCGCCCGCGGCCGTTCGAATGCTCACAATGTAGCAAAACGTTCTTGAGTCAACAGAATCTTAATCAACATGAGAGAACCCATAATGGAGTTAAAGAATACGTGTGTCACCAATGTGGCAAGGCATTTGGTTCACCACACAACTTGGAAGTGCACAATATTGTGCACACTGGCTACAAACCCTACATATGTAGAATGTGTGGCAAAGCCTTTGCTCGAAAGGCTGAAATCAGGGATCACGAGAGAACGCATACCGGAGAAAAACCCTACCAATGTGAATTTTGTGGTGCAACCTTCAGCCAAAGATCGAATTTGCAATCCCATAAACGGGCAACGCACTATAATGACAAAAGATACAAGTGCGATGATTGCGGCAAAGGTTTTAAGCGTAGAAGATTATTGGATTACCACATAAAGGCCGCGCATACCGGAGAAAGGCCATATAAATGCGAAATATGTACAGCTACGTTTGTATATCCCGAGCATTTTAAGAAACATATGCGGATTCATACCGGGGAAAAGCCCTACCTTTGCGAGGTATGCGGAAAGGCCTTTAATAGTAGAGATAACAGAAATGCACATCGGTTTATTCACAGTGATAAGAAACCATACGAATGCTTGGTTTGTGGAATGGGTTTCATGAGAAAACCACTTTTGTATGCTCACATGCAAACTCAGGGTCACTTGAACGACACCATTGTCGTTAATCAGCCACGATTAACAACAGAGGAAGATCAAGTGATAACACTGCCGGACGGTAATGTGGAAGTTCTTATGGATGGGACAGAGCACGAACAGTTGGAGGAAACAGAACTGTATGTTACCGAACTGAAGGACCACGTTATTATACAACAGCAAGGCGACGAGCAGATATATAATGAGGAGAGCGTTCTTAATATTCCCACGGAAGAAGGCGTGGGTGATGATGAAGTCAACTTAGTGGGTGAACAGATCACTTTTGCCGAGAGCGAAGTGATAGAATGTAAGACTGAAGAGAGTCAGTCGGTCGAGGAGGTGTACAACTACCATGAAAGCGAAGAGACAGGCGAGACGATAGTCGTACCTACTACCGCCGAGTACAAAGAAATCGGCGACGAGAAGAGTGCTGTACGATTAGTGCAGATACGTTTGCCAGCTGGTATTGCTGGTGACGGAAGAAGTTGGTTAAGTTTAGTACAAAACACGTGA
Protein Sequence: MTADAEKDSTHCLICNSKVGVSSRNCIRIFNEASVTPSEKPLVDTICTVLETDLTEENVHSLVLCKKCYKLFNEVDELESRLVEIKLELYNNYKKTIKQLTNISQVEEEYNDHDYIDNGEDQILEGESIYVEELERRDESHEEEESQEHQEMEVETLHQEEPETMVSEDQEQFIKVELQEAEIQEACSAEEKKKTKRQRVSMKPPEPPQEQIVSRDGSLYTCLLCSSDEDRLTGDAKSIIAHARSVHDTRLYICDICGDDFRKRNELSLHLDEHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSKNLLDEHINTHTGVRPYVCENCGKDFASKYTYKAHVKTHEVRPRPFECSQCSKTFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCEICTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEEDQVITLPDGNVEVLMDGTEHEQLEETELYVTELKDHVIIQQQGDEQIYNEESVLNIPTEEGVGDDEVNLVGEQITFAESEVIECKTEESQSVEEVYNYHESEETGETIVVPTTAEYKEIGDEKSAVRLVQIRLPAGIAGDGRSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734079;
90% Identity: iTF_00633793;
80% Identity: -