Ccet003859.1
Basic Information
- Insect
- Crossocerus cetratus
- Gene Symbol
- -
- Assembly
- GCA_963675795.1
- Location
- OY776663.1:9105769-9110574[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.9 3.5e+02 2.1 0.0 2 23 62 83 61 83 0.90 2 20 0.00094 0.083 13.5 0.2 1 23 98 120 98 120 0.97 3 20 0.0041 0.36 11.5 0.6 1 23 126 148 126 148 0.96 4 20 2.4e-05 0.0021 18.5 5.7 1 23 162 184 162 184 0.98 5 20 0.00037 0.032 14.8 0.1 1 23 190 212 190 212 0.96 6 20 5.3e-05 0.0047 17.4 6.2 1 23 223 245 223 245 0.97 7 20 9.5e-07 8.4e-05 22.9 1.6 1 23 255 277 255 277 0.98 8 20 2e-06 0.00018 21.9 1.7 1 23 283 305 283 305 0.98 9 20 1.5e-06 0.00013 22.3 1.8 1 23 311 333 311 333 0.98 10 20 0.0003 0.027 15.1 4.9 1 23 339 361 339 361 0.98 11 20 0.0021 0.18 12.4 3.0 2 23 505 526 504 526 0.95 12 20 0.11 9.8 7.0 0.9 3 23 536 557 535 557 0.92 13 20 0.00025 0.022 15.3 3.2 1 23 563 585 563 585 0.97 14 20 0.036 3.2 8.5 0.3 1 23 589 611 589 611 0.97 15 20 1.1e-05 0.001 19.5 3.2 2 23 618 639 615 639 0.94 16 20 9.2e-06 0.00081 19.8 0.9 1 23 645 667 645 667 0.98 17 20 0.12 10 6.9 0.6 1 23 673 695 673 695 0.98 18 20 5.4e-06 0.00048 20.5 0.5 1 23 701 723 701 723 0.98 19 20 2.1e-06 0.00019 21.8 1.6 1 23 729 751 729 751 0.98 20 20 8.5e-06 0.00075 19.9 5.8 1 23 757 780 757 780 0.98
Sequence Information
- Coding Sequence
- ATGTTAGCACAAACATCACACGCGCGAAAGCGACAAACGCTGGCCGTGGATGAGCAGGAAAGCGAGCAGCAGGTGAATGACGATTTCAGTATCGCAGTGAAAGAAGAGCTCTACGACGAAAACACATTGCCCGCGTCACACGTGCAGGGCTTGGAAGTACTTATCAGCAACGAGAACAGTGTCCAGTGCAATCTTTGCACAGCAATATTAGTCTCGGAGGATGCTCTAGCCCTCCACTTCGATTTGCACGACCAGCAACTACGAGAGGATCGGACAATGCACGAGGATCTGTATATGTGTGAGCATTGCGGTGGCGGCTTTTCAAAAGCACTCGCTCTCTGGCAACACCTGAAAGAGCACGACCCGGAGTGCAACTACTGTTGCGAGGTCTGCGGTTTTATGGTGACGACCTATCAGTTATTACTCGCCCATCAGGCCAACCACGACGACGAGAatgaggacgaggaggaggaggaggaaagttaCCACTGCGAGATTTGCGGCGAGAGCTTCACCTCCCACGATCATTACCAGGAGCATCAATCGACACACGAGGAGAACAGATTATTCGCTTGCGAGATATGCGGCGCCGCGTTCAGATATCGTCAGGGCTTGCGATTGCATGCGAAGCTCCACGAGCCGAATTACGTGGCCCCGGAGAGGAAGCACCACTGCCAGGTGTGCAATAAGCGCTTCTCACGGAAGCAAGTGCTGACGGTGCACATGAAGACCCATCAGATCCTGAAGGGCCCCCAGGCCGAGTACCACTGTCCCGTTTGTGGGAAATCGGTCTCGAGCAAGACCTACCTGACGGTTCATTTGCGAAAGCACACCGGCGAGAAACCGCATGTCTGCGATCTGTGCGGCAAGGGATTCACCTCGCAGAACTATCTCAGTGTGCACCGGCGGACGCATACCGGCGAGAGACCGCATCAGTGTCCGCAATGCGACAAACGGTTCACTCAGCGCACCACCCTCGTCGTACACTTGCGGGGGCACACCGGCGACCGGCCGTATCAATGCACGTGCTGTCAGAAATCCTTCGCCTCGAAAACCATGCTCAATTCACATTTGAAGACTCACGCGAAGCACACGGCGCGCCAGCAACAGGAGCAACTGCGCCGGCAAGACATTCTTCAACAAGTAGGAATGGCGGAAGAGATACTTAGGTCACAGAAAACGTCGACCTCAATCGTCAAGTTGAACGTTGGGCCAGTAATATTGCCGACAATCGTAGCACTGCGACCCTTCGGCGCCACAATATTCGCATATAAGACGAACACCAGAACAACCCCAACCCAAAGGATACTATACCCCGTTACTGTACAAGCATGCAAGGTTGGCCCCAAAATAAAAACCGGAATCGACACTGAGTCAAAGTCTCAAGAGACATTTAACTCGAAGATCATATCAGTGGAAAGTGGGAAAGACGCCAATGTCGTAGTCAAGGACAGAAATGAACCCATGGAGAGCCAGTCGAAACCAACGAAGAAGCCAGCGTCAACAATCTTGGAGTGCGAGATCTGCCACAAGCGAATGCGTCGACCAAGTCAGTACAAAAAGCACAAACAGGATCATGCAAATCTCGAGGCACTCGACAATCGCTGCATTCACTGCGGCGAGCAATTCCTTGTGCCGGAGAAGCTCCGGAGGCATATGATAAAGATGCATCAACAGGAAAAGCCGCACAAGTGTCTATTATGCGAAAAAGCATTCAAGACCAAGGAATTCCTTAACACGCATGCGAGGCAGCACAATAAAAGATTTACATGCGAGATATGCGGTATCCGCAAGGTATCGGCATTCGACATACGTCTTCACATGAAGAAGCACAAACAGGAGTATGAGTGTTATTGCGAGTACTGTAACAAGGGTTTCTACACGAAACAAACCCTCGGCAGGCACATTCGAACACATACGGGCGAGAGGCCGTACGCTTGCAAAATTTGCAAGCTGACTTACGCCAGCAAGCAATATCTCCGGCTGCACATGCGAGTACACGCGCCAAAGGAGAAGTATAAGTGTACACTATGCGATTTCGAAAGCTACTGGAGCGGCGCACTGAGGGTCCACAAGAAGACGCACACCGGCGAGAACCTTTTCACTTGTGAAATATGCGGAAAGACCATCTCCGGTAAAACCTACCTTCGAACGCATATGCAAATACACTCGGGCGAGAAGCAGCATGTCTGCGAGAAGTGTGGAAAGTCGTTCGTCGCGCGGAAAACCCTGACCGTGCACTTGAGGACACACACAGGCGAAAAACCATACGAGTGCAAGGTCTGCCATAAGAGGTTCACCCAACAGAGTTCTATGAATTCGCATAGAAAGACATTTCACCCCGAAGTGAAGAGTACTAGCAGTCGAAATCGAACGAAACAAAATCAATAG
- Protein Sequence
- MLAQTSHARKRQTLAVDEQESEQQVNDDFSIAVKEELYDENTLPASHVQGLEVLISNENSVQCNLCTAILVSEDALALHFDLHDQQLREDRTMHEDLYMCEHCGGGFSKALALWQHLKEHDPECNYCCEVCGFMVTTYQLLLAHQANHDDENEDEEEEEESYHCEICGESFTSHDHYQEHQSTHEENRLFACEICGAAFRYRQGLRLHAKLHEPNYVAPERKHHCQVCNKRFSRKQVLTVHMKTHQILKGPQAEYHCPVCGKSVSSKTYLTVHLRKHTGEKPHVCDLCGKGFTSQNYLSVHRRTHTGERPHQCPQCDKRFTQRTTLVVHLRGHTGDRPYQCTCCQKSFASKTMLNSHLKTHAKHTARQQQEQLRRQDILQQVGMAEEILRSQKTSTSIVKLNVGPVILPTIVALRPFGATIFAYKTNTRTTPTQRILYPVTVQACKVGPKIKTGIDTESKSQETFNSKIISVESGKDANVVVKDRNEPMESQSKPTKKPASTILECEICHKRMRRPSQYKKHKQDHANLEALDNRCIHCGEQFLVPEKLRRHMIKMHQQEKPHKCLLCEKAFKTKEFLNTHARQHNKRFTCEICGIRKVSAFDIRLHMKKHKQEYECYCEYCNKGFYTKQTLGRHIRTHTGERPYACKICKLTYASKQYLRLHMRVHAPKEKYKCTLCDFESYWSGALRVHKKTHTGENLFTCEICGKTISGKTYLRTHMQIHSGEKQHVCEKCGKSFVARKTLTVHLRTHTGEKPYECKVCHKRFTQQSSMNSHRKTFHPEVKSTSSRNRTKQNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -