Celi006595.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026074.1:2393790-2397115[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.5e-05 0.0027 18.7 2.7 2 23 135 157 134 157 0.96 2 10 0.00069 0.054 14.6 3.6 1 23 186 209 186 209 0.96 3 10 3.8e-05 0.003 18.6 1.6 1 23 215 237 215 237 0.98 4 10 7.5 5.8e+02 1.9 0.1 3 21 238 256 238 257 0.94 5 10 0.42 33 5.8 2.0 1 20 265 284 265 287 0.86 6 10 0.12 9.2 7.6 3.2 1 20 292 311 292 315 0.88 7 10 7.6 5.9e+02 1.9 0.1 1 20 337 356 337 358 0.80 8 10 2.4 1.9e+02 3.4 1.1 1 20 374 393 374 396 0.90 9 10 1.7e-05 0.0013 19.7 5.8 1 23 486 509 486 509 0.97 10 10 0.068 5.3 8.3 0.9 2 21 516 535 515 540 0.91
Sequence Information
- Coding Sequence
- ATGTCCGAAAAGTGCGATGGAGTTAACGTTGTGGAGGAACAGCATACAGAGTCGTCTGTGGACGCGGTTGAATCTGCGAAATCTGAGGAACGCCCTCAGAAGAAGATCATTCCCGAAACCGGCTTTCGAGGATTCATCGCGATCCCGCACGTGCGCTTGGATCGGTACGATATAACTCCTTACCTGAACGGGAAGAAACGGCCTCCTATTAAAATTAAAAAAAACCGCGGCAAATATGACGCTGCTCATGAAAAAAGACTCAAACAAAAATGTCTCGTAAGGCTGAAGAGGGACGACCTTATTAAGCTGAAAGCTTCTATTGATCACAGGTCTGAGACCCCAGTGTCCGCTTCGTCATCCAATTCAGACTCAGAGGAATCAAGCCCCTCAGATATGGCTATGAGGTGCAAAATTTGTGACAAAACCTATAATAGCCAGAAAAAACTTATGAAACATCTAGAGAAAAAGCACATAATCTACAAAGCTCAATACACTAAGCCACAGAAGCGAGTATCATTCTCGGAGCATGTGATCGTCCATGAAGTGAAGGAGTATCACAAGTGCCGTAAGTGTCCAAAAATATTTGAAGACTACAAGTCATTGAAACTACACACAAGACAGCTGCATAAAAAACGCAAATGCTATATTTGCAACTATTGCAACAAGAATTTCGTTGACCGTATGTTCTTTAAAGTTCATATAAGACTGCATTGTGATGTGTGCGGATTATTGCTTCCTAATAGAGGGAAATTCCTTGAACATAGACGGGATGTGTGCCGCGTTTACAAAATACACAAATGCAAGACTTGCGATGCGTCTTTCTTTAGAATCATGGATGTGAAAGACCATAGCTACGATCATATGGATGTTTGTTACGTTTGTGACATCTGCAAGGAACAATTCAAAACTAAATGTGCTATTGCTCACCACAACTCGTTCCTCCATTCTAAACAGAAAAAAAGGCCAAAAGAATTGTATGTTATGCGTAAAATGGGCACTGAAAGGCTATATCTTTGTAAGTTTTGTGATGAAAGCTCCGTTGAGCGGGAAGTTATAGAAAGGCATGTTCAAAACCTCCCAGACTTGACAAACAAAGCGACAACAGGTTACAAAGATTACTATTTCTGTGACCAATGCATGAAACAATTTGATACAGAGACTGATATGCTACAGCACAAATGGACCCACTTTTTAAATACGAGTGACAACTCACAGACGCGGCCGAAAAGCATATTGTCGAAAAGTAAACCTAGTTTAAAAACCTCGTATAATATATCGGAAGAGATACCAGAGGCCTTGAAGCCGTTCGTAGTATTAGAGAAGGTTGATGATTTGTACCCATTACAGTACGTCGAATTTGTAGATGTTAGCGATTCCAAGGCCAATACCATTAACATAAATACATTGAAAAAGGCTATAGTTGATCCTAAAAGCAAAAAAACTCTCATATCTAGACACCAGTGTGAGACATGCGGAAAGTACTTCTCAAATAACTACTGTCTCAACCGCCATATCAGCACCCAACACGAAGATTTTGAGAAACTACGCTGCAAAGTCTGCGAGGAAACTTTTGTCTGGCCATCACTCCTCAGATCGCATAAGTGCATCCGACTGAACCATCCTGAGATGCCGTTTGATGATGCAAGAGCAGAAATTCTCTTTGACAACTTTAATATGACCCAGAATGGTTTTGATGATTTTAATATAGAAGAGAACGATGATTATATGAATACGGTAGACTTTGAGATTCCAGCTCCGATAGTAGAACTAAGAGAGTGTGATAGCACCTTTAATTTTATGGGCAATAGTGTGGAGCAAAATGAGTATACGATTCCTGACAAGAATGGTGTCACATCCAGCAGTTATAAATTAGTCGTGCAAGAAGTGCCCATTGAGTTTTGA
- Protein Sequence
- MSEKCDGVNVVEEQHTESSVDAVESAKSEERPQKKIIPETGFRGFIAIPHVRLDRYDITPYLNGKKRPPIKIKKNRGKYDAAHEKRLKQKCLVRLKRDDLIKLKASIDHRSETPVSASSSNSDSEESSPSDMAMRCKICDKTYNSQKKLMKHLEKKHIIYKAQYTKPQKRVSFSEHVIVHEVKEYHKCRKCPKIFEDYKSLKLHTRQLHKKRKCYICNYCNKNFVDRMFFKVHIRLHCDVCGLLLPNRGKFLEHRRDVCRVYKIHKCKTCDASFFRIMDVKDHSYDHMDVCYVCDICKEQFKTKCAIAHHNSFLHSKQKKRPKELYVMRKMGTERLYLCKFCDESSVEREVIERHVQNLPDLTNKATTGYKDYYFCDQCMKQFDTETDMLQHKWTHFLNTSDNSQTRPKSILSKSKPSLKTSYNISEEIPEALKPFVVLEKVDDLYPLQYVEFVDVSDSKANTININTLKKAIVDPKSKKTLISRHQCETCGKYFSNNYCLNRHISTQHEDFEKLRCKVCEETFVWPSLLRSHKCIRLNHPEMPFDDARAEILFDNFNMTQNGFDDFNIEENDDYMNTVDFEIPAPIVELRECDSTFNFMGNSVEQNEYTIPDKNGVTSSSYKLVVQEVPIEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -