Celi024803.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026065.1:18422341-18440693[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.023 1.8 9.8 1.6 5 23 304 322 296 322 0.93 2 12 0.045 3.5 8.9 6.0 1 23 330 352 330 353 0.94 3 12 0.53 41 5.5 0.5 1 23 357 380 357 380 0.87 4 12 0.014 1.1 10.5 2.4 1 23 456 478 456 478 0.98 5 12 0.039 3 9.1 4.5 1 23 486 509 486 509 0.97 6 12 0.093 7.3 7.9 3.1 1 23 513 535 513 535 0.98 7 12 0.0013 0.1 13.7 3.4 1 23 540 563 540 563 0.95 8 12 0.024 1.9 9.7 2.7 3 23 569 590 567 590 0.93 9 12 1.1 89 4.5 0.1 1 20 611 630 611 632 0.84 10 12 9.9e-06 0.00077 20.4 0.7 1 23 726 748 726 748 0.98 11 12 0.00075 0.058 14.5 0.8 3 23 756 776 754 776 0.96 12 12 6.4e-05 0.005 17.8 2.7 1 23 782 805 782 805 0.98
Sequence Information
- Coding Sequence
- ATGCGGGATATAAAGGCGTGCATTGTGTGCTTCAGCAGTGGTGAAAAACTCTACAGTTTGAACTTCGGCACGCAAAGAAAAGATTTCAACTTGGTTTCCGGACTTCAGCTGGTGCAAGGGAATGGCATGCCAGAATACTTGTGTGTAGTGTGTTCAGCATATGTGAAGAAGTTTATAAAGTTCCGAGAAAAGTGCCACCGAGCACACTATGCATTGGAGCAAATACTGATTAAGAATAAAGAGATCAAAATATCAAACTTGAAAGCATTGAACTGCCAACAGTTAAATTTAACACCTACTTTATCCTATGTTGATTTTGATAGAACACATTACGAACAAGTCACGTTCAAGCTGGTGAATTATTGCCGCACAAGTGTTGCACAACTTGGATTTATACCTGTGGCTCATTACAGTACGATCACCAAGGAAGATACCTACCTACATACATTTGCATCTGAGATGAAAAAAGTTACACCTAAAGAGATTGACAGTCCGGTTAAAATTGAAGTAGATCAACATATGCCAACGCATATTGTAGATGAATTCCCACTAAAAATGGCAAGCTTACTGTACAATGCCTCAAATAGCCAAAATGATGTGTCATCAAGTTTATTAAGAAAAACTTTACAACGGAATAATGAAGTGCCTTCAAATGCGCTTCGTAAAGCTATAGAAGAATTCACAGTGAATGAAAATGATACATTTGGACACGATAACAATATTAATAATGATGTGTATGGAAGTGATTGTGAAGACAACAAATTTGAACTTACATCTTGTAAATTAAATAACAGAGCGGACGGCTCCAGTTTTAATGAGGAGTATGGGAATATAATCCCTATTTCTGTGAAAGACGCGAAAGCAGCAGTGGAGGTGTATAATTTCTGTTCTGTTGGGGAGTTTCAGTGTAAATGTGGCAAGAGGTTTGCTAGTAAGAGAACTGCTAATCAGCATGCTCGCAGGCATGATATGCATATAAGTGGCACCTTCCGTTGTGAAATTTGTGACTACTACTTTAAGACTTCGTTCCTACTTCAATGTCATATGACCGACCATCACATGTATAAATATCTGTGTAAAAAGTGCCCTGAAGTGTCTTTTTCTAAATCAGCAGCGAAACAACATTATGTATGGAAACACATACACAACGGCCGAAAACATGAGGGAGTCAAATGGTCAGCTATAAAGAAACCCGCGTGGCTTGGACCTAAAGGGGGTGCACGGATTAAGGGCACTTTTGCATCGAAACCGAAGCGAGTGAGCAAAGTCCCCAAAGACTTCCCCGTGTACTCCCCAATCACGCAAGAGGAGCAATACCTCCTTGTGCAGAAGAGGAGGGAGTCTCGTAACTACCTTGAAGCCAAGTTCAAATGTGAGCTGTGTTACCGGGGCTACAGGCTCACCAGTACATACAACAAGCACATGGTTAAACATGACCCGGTGGTATCGGGTCACCACCAATGTGACATGTGCAAGTTGTATTTCCGGGACACGCGGAAGATGTACAAGCATATGAATGTCTACCACTTGTTCAAATACTCCTGCCGGTACTGCGATTTCATCTGCACTAACAAAGGCCAAGCGTTGTACCACTACAGGTGGCATAAGAATGTCACATACGACTGTCCGCACTGTGATAAGAAGTTTTCAAAAATCTCGACACAACTAACGCACATCCGGTTCAAGCATCCCGGGACGGATATCTGCAACCTCTGCGGACACAGCTTCGTTAGCTCCAGCGGCCTTAACTGTCACAAGCAAATGTCGCACAGTAAAGAGGATATAGAGATAAGTGAAGCAATGTCCACAAACCCGTCGCCCGCCGAGCCGTACTACTGCTCTGATTGCAACATGCAGTTCCTGAACGAACAGGCCTACATTACACACCTTGGCAGCTCGCGCAAGCATGTCGAGACTAATGTGTCTGTCATAAGACACGAGCGCGCCAACCGTCGGAACGAGCGGCTAGAAGCTCGGGGGGAAGGGGTTGGGGCCGGGGGTGGGGGGCGGGGCCGGCCGCGAGCCACGCCCCGCGCCGGCGCCGGGGAACAGGTGCTGCACACGGGGACCACCACGCCCACTAGCTGCGAGGTGTGCGGGAAATACCTGGAGAGCGACGTGGTGGCGCGGAAACACTACGAGGCGGAGCACCCTGGGACCGACTACCTCAAGCGGTACATGTGCGACGTGTGCGGACACACCACCAAGCAATACGCAAACCTGCTTGTACATATGAGAGTACACACACTGGAGAAGCCGTACGGCTGTCCGCATTGTGACCGGAGGTTCAGCATGCCCAGTAACAGGGACCGCCACCTTGTCGTGCACACAGGCGAGAAGCGTTACCAGTGCCAGCACTGCAGCCGGCGGTTCACGCAGAGCACTGCAGTGAAACTGCACATACAGACGGTACACATGAAGATACCTTACAAGCCGTGGGACAAGAAGAACCGGAAGCGACGCAAAGAAATGGAGCCCAACACTACGGGGTTGGACATGATTACGGCACCGGTGGGCGTGGCACCGCCCGCGCCGCAACATAAACTGTTACTGGACCCGCAGGGGGAATATATTCACTACATAAGCTACGCTGATGAGCAATAA
- Protein Sequence
- MRDIKACIVCFSSGEKLYSLNFGTQRKDFNLVSGLQLVQGNGMPEYLCVVCSAYVKKFIKFREKCHRAHYALEQILIKNKEIKISNLKALNCQQLNLTPTLSYVDFDRTHYEQVTFKLVNYCRTSVAQLGFIPVAHYSTITKEDTYLHTFASEMKKVTPKEIDSPVKIEVDQHMPTHIVDEFPLKMASLLYNASNSQNDVSSSLLRKTLQRNNEVPSNALRKAIEEFTVNENDTFGHDNNINNDVYGSDCEDNKFELTSCKLNNRADGSSFNEEYGNIIPISVKDAKAAVEVYNFCSVGEFQCKCGKRFASKRTANQHARRHDMHISGTFRCEICDYYFKTSFLLQCHMTDHHMYKYLCKKCPEVSFSKSAAKQHYVWKHIHNGRKHEGVKWSAIKKPAWLGPKGGARIKGTFASKPKRVSKVPKDFPVYSPITQEEQYLLVQKRRESRNYLEAKFKCELCYRGYRLTSTYNKHMVKHDPVVSGHHQCDMCKLYFRDTRKMYKHMNVYHLFKYSCRYCDFICTNKGQALYHYRWHKNVTYDCPHCDKKFSKISTQLTHIRFKHPGTDICNLCGHSFVSSSGLNCHKQMSHSKEDIEISEAMSTNPSPAEPYYCSDCNMQFLNEQAYITHLGSSRKHVETNVSVIRHERANRRNERLEARGEGVGAGGGGRGRPRATPRAGAGEQVLHTGTTTPTSCEVCGKYLESDVVARKHYEAEHPGTDYLKRYMCDVCGHTTKQYANLLVHMRVHTLEKPYGCPHCDRRFSMPSNRDRHLVVHTGEKRYQCQHCSRRFTQSTAVKLHIQTVHMKIPYKPWDKKNRKRRKEMEPNTTGLDMITAPVGVAPPAPQHKLLLDPQGEYIHYISYADEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -