Celi012164.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- zfpm1
- Assembly
- GCA_907269065.1
- Location
- OU026076.1:12739198-12741734[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0014 0.11 13.6 2.7 1 20 114 133 114 135 0.94 2 17 0.015 1.2 10.4 2.4 1 23 165 187 165 187 0.98 3 17 0.016 1.3 10.3 0.5 1 23 191 214 191 214 0.94 4 17 3 2.3e+02 3.1 2.3 5 22 220 237 218 237 0.92 5 17 0.026 2 9.7 0.6 1 23 246 269 246 269 0.86 6 17 0.00096 0.074 14.1 4.3 1 23 275 297 275 297 0.95 7 17 2.2e-05 0.0017 19.3 2.1 1 23 304 327 304 327 0.98 8 17 0.0096 0.74 11.0 3.2 2 21 444 463 443 464 0.93 9 17 0.007 0.54 11.4 0.4 3 23 470 489 469 489 0.97 10 17 2.4 1.8e+02 3.5 0.7 3 23 496 517 494 517 0.92 11 17 0.55 42 5.5 0.5 1 23 522 544 522 544 0.93 12 17 2.9 2.3e+02 3.2 3.9 6 21 551 566 548 567 0.92 13 17 0.0014 0.11 13.6 0.8 1 23 580 603 580 603 0.93 14 17 3.2e-05 0.0025 18.8 2.2 1 23 609 631 609 631 0.98 15 17 0.65 51 5.2 1.2 5 23 641 659 639 659 0.96 16 17 0.55 43 5.5 0.6 1 23 665 688 665 688 0.86 17 17 0.00014 0.011 16.7 0.2 3 23 698 719 697 719 0.97
Sequence Information
- Coding Sequence
- ATGGAATCAAGCCCCTACCTGCCGAACCAAGTATGCCAAGCCTGCTCCTCATCTATCACGGACTTTGTACCTTTCTTCAAACTCTGCAAAGAGTCTGTCGCCAAATGGAGTCAGATAGCTAACTATTTGGACACTATATCTATCCACAAAAAAGCTACCACAGCTTACGTATTACTTAACGACGACCCTAAAACTGTGGCTGATAGAAGCAGTGGAAACAAAACCCCTAAAGAAATCATAAGGAACATGAGGTTTCGCCTCAACCACGTCCGTTACGAAAACAAATGCAAGCTAAAAAGGGCTAAAAGTAAAGCGCAGAACGTGGAAGAGGAGAAGAATTTCGCTTGTCCAGAGTGTAAAAAATGTTTTAAAGAACTATTCAAATTCAACAGGCATATAAGCAATATAAAGAAAAATTGTTGCGAGTTTTGCTACTCTATCGTTGATAATAAATCGTTCGGGAAGCATCTTCTAAAACATAACATAACTAGCTATAGATGTGGCGTTTGCTTTTTGCATTTTGAAACGGAGGATCGTTTATTCAGGCACAGATCCGTTCACGACGGGAAGTTTATGTGCCCGGAATGTAAAGTGACTTTTCCCACCATGGAAAGCCAAACCATACATACTAACTACAGACACGCAAACATTCACTGCGTTTGCAACCAGATCTTCACCAACAAAGGCTGCTATTTTATACACAAAAAGACGTGTGGCGAGAAACTGTCGCAAATGTATATCTGTGATTATTGCTCGAAACAATTTAATAGTAAGAGTATCATAGCGGCGCATATTACGTATTTCCACCGGAAAAAGAGGACGCACCAATGTGACCAATGCGGCAAGCAATTTTACAACTCGCATTCTTTGATAGAGCATAGTTATTCCCATGATAAAGTCCTCGATAGGTTCTCGTGCGAATTTTGCGGCCAGAATTATACCACTAACGGGGGTTATAGGAGGCATATGAGGAAGAAGCATTACAGAGCCGATCCCGAGTTGTACAAGAAAATGCGGTACCAGTGCCACGTAGAGGATGAGCCAACGTTGCCGCCGAGTCTTTGCCGCTATTGCACCGAAGGCGTCATATCCACTGCAGGCTTCAAGCAATACTGTCAGCAGTCTGCTCAATTATGGAACGAAGCTTCCACTTACCTAACGACCATAGAAGATCCTGCAGAAAACGTTAAAACATTTTTCATTTTCTACCCCAAGGATAAAACAATTTGCGACAGCTCTGACGTTATCACGACTGCAGAAAACGCGGTGACGATCTTGAACGATCCGAAGAACCTGAGAAAGAAGAAGAAAAGACGTCCGTTTTCTTGCTGCTGTCCTTATTGTAATAAAAATTTTAGTGCTTTGGAATACCTTAATGATCATTTGAAGTATACGCTGAAGAGATTCTGTCTGGTATGCGGCGTTGCCTTCAATAAGAAAGATTTAGCGCAACATATGACCAAACATGAGGTGGCAGCTATCGACTGCAAGAACTGCCACGAACTCTTCGAGAATTACGCCGAATCTCGGGCTCATTGGATGAAGTACCACGGTCCGAATACCCACGCCTGTAAAGTTTGCGGAAGCGGGTTCTTAAACGAACGGGGTCTTAGAGCCCACTACTATCTGCACACCCTCTTCCACTGTTCCTGCGGCGAAAGTTTCGAAAACAGCCGATGTTACAAACATCACCTAACTAAATGCAAGCCGGAGAACAATAAATCGGTCGGCAGCGTCTTCGAATGCGACCATTGCGGTGTGAAATATGACAAAAAACCCTCATTACGTATCCATATAGTTCAGAAACATCTTAACGTTCTTCCTTTCGTTTGCCAAACTTGTGGGAAACGTACTTCCACTTTAGCTCATCTAAGATCTCACGCGAAAACTCACCAGAAAGAAAGGAAGATTTTGGACTGCCATTGCGGAGCTAAATTCCGCACTGATTTAGGGTACAAGCTGCATTTGAGGATTCATAGTGGAGATAGACCTTATAAATGTGATTTATGCGAAGAGAGCTTCCTCTCCGCGTCTCGGCGCTTGGATCACGTGAAGAGACGTCACCAGAGCACGAAAGAGATGCCTCACGGCTGCACTAAATGCGGTGCGAAGTTCATAAGACCTTGGGAGCTGAAAAAGCATTATTTATCCGTGCACAGTTCCGTTGTAGAAGTGCAGCCGTGCCAGAGATCTCTGGATACGCCGCATAGACGCACGAAGGCTTTGAAATCTACATGGTAG
- Protein Sequence
- MESSPYLPNQVCQACSSSITDFVPFFKLCKESVAKWSQIANYLDTISIHKKATTAYVLLNDDPKTVADRSSGNKTPKEIIRNMRFRLNHVRYENKCKLKRAKSKAQNVEEEKNFACPECKKCFKELFKFNRHISNIKKNCCEFCYSIVDNKSFGKHLLKHNITSYRCGVCFLHFETEDRLFRHRSVHDGKFMCPECKVTFPTMESQTIHTNYRHANIHCVCNQIFTNKGCYFIHKKTCGEKLSQMYICDYCSKQFNSKSIIAAHITYFHRKKRTHQCDQCGKQFYNSHSLIEHSYSHDKVLDRFSCEFCGQNYTTNGGYRRHMRKKHYRADPELYKKMRYQCHVEDEPTLPPSLCRYCTEGVISTAGFKQYCQQSAQLWNEASTYLTTIEDPAENVKTFFIFYPKDKTICDSSDVITTAENAVTILNDPKNLRKKKKRRPFSCCCPYCNKNFSALEYLNDHLKYTLKRFCLVCGVAFNKKDLAQHMTKHEVAAIDCKNCHELFENYAESRAHWMKYHGPNTHACKVCGSGFLNERGLRAHYYLHTLFHCSCGESFENSRCYKHHLTKCKPENNKSVGSVFECDHCGVKYDKKPSLRIHIVQKHLNVLPFVCQTCGKRTSTLAHLRSHAKTHQKERKILDCHCGAKFRTDLGYKLHLRIHSGDRPYKCDLCEESFLSASRRLDHVKRRHQSTKEMPHGCTKCGAKFIRPWELKKHYLSVHSSVVEVQPCQRSLDTPHRRTKALKSTW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -