Celi012617.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026076.1:17187219-17189557[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6 4.6e+02 2.2 1.5 2 23 46 67 45 67 0.89 2 14 1.5 1.2e+02 4.1 4.3 1 23 137 160 137 160 0.95 3 14 5.5e-05 0.0043 18.0 3.0 1 23 165 188 165 188 0.97 4 14 1.9e-05 0.0015 19.5 2.1 1 23 192 215 192 215 0.97 5 14 0.043 3.3 9.0 4.1 3 23 219 240 217 240 0.95 6 14 8.9 6.9e+02 1.7 1.5 2 19 247 264 247 267 0.89 7 14 0.0083 0.64 11.2 3.4 1 23 318 341 318 341 0.96 8 14 9.5e-06 0.00073 20.5 0.9 1 23 415 438 415 438 0.97 9 14 0.0024 0.19 12.9 0.1 1 23 443 466 443 466 0.93 10 14 0.0037 0.29 12.3 0.4 3 23 474 495 472 495 0.92 11 14 0.28 21 6.4 0.6 2 23 501 523 500 523 0.91 12 14 0.0067 0.52 11.5 2.6 1 23 527 550 527 550 0.97 13 14 8.1e-05 0.0063 17.5 0.7 2 23 557 578 556 578 0.96 14 14 4.1e-05 0.0032 18.4 1.0 1 23 584 606 584 606 0.97
Sequence Information
- Coding Sequence
- ATGATCCTGACTATTATCCAGGTTTCCCATCGTAAGCCGGAACGGAATTTAGTACCAAACGAACAAAGGAGGAGAAACTTCGAGATTTTGTTCAACAATACGACGGTTGTTCCGTTCAAACACCGCGGGAAATATCTGTGCTTTTTCTGCGTTACAGAGATGGAAAATCGCGAGCACTTGGTCGAACACAATCGGACGCACTTGCCGTGTTGCACTGAAGATCGGTCACTGAAAGTTATGAAAGGAACTCAGTTTGAAATCAAAGTAGATGTATCGGAAATACAATGCAGACTTTGCTTTGAACACTTTGAAAACATACAAAACATTGCCTTTCATTTGTCATGCAAGCACAATCTGACTTATGACTCAGACACCCCGGTATTCCTAACAGCGTATAGGCTGATAGACTTCAGGTGTCTAATCTGCTATGAGAAATTGAAGTGCTTCAGAAACCTTGTTCGCCACATGAATAGTAAACACCCTATCAACAGCTTTACATGCGAGAAATGTGATCAAAAGTATAATAAAAAGAAAGACTTGCAATCTCACATACGGCAGTATCACAAATTGGCGTATAAATGCTCCAAATGTTTTGAAAACTTTAGTTCGAACTCTGATCTAATTAGGCATAAAACGACAGAACACATCTCTCATTGTAACATATGTTTGAAGACGTTTTCTTCGTTTAGGATGCGGTTAAAACATATGAAGAATGAGCATGATACTTCAGAAGGTGGTACTTGCGGATTTTGTCACAAGCTATATCATACCAAAAATGGTTTTCTAGACCACGCGGCTAAGTGCACAGTCGGGGGTTTTAAAAAATTGGAAGTAGATGAAATCGTTATAGAGGATAAAGAAAAGAAAGACACAGTTAAAGATCTACGAAAATGGATAGCCTTTATCGTTAATAGTACAACTGTTCTCCCTTTTAAGTACTTTCACAACAGGTTTCGATGTTTCTACTGCCCTAAAGAGTACGACATGTGCTCGGATCTTAAAAGTCATTCCACGACAGACCATCCCGTATGTGATGTCAAACTGAAATGTATGAAATTGAAAGGTCTCTGCCCGTCGAAAGGCATGAAAATCAAAGTCGACACTTCGTTGCTGCAATGCAAGTTGTGCTCAGACGAATTAGAAGATTTTGAGGCGTTAGTGGAGCATTTGAAAGGAGAGCACAAAGTGGAGCTACCCAACTGCGTCGAGCAATTTCAACCGTTTAAACTAATCCATGACCAGTTCCCTTGCACGTGGTGTGGGAAAGAGTTTCGGCACTTCGGGTCTTTGTTAAAACATCTCAATGTAGACCATACGGAGAACAGGTTTCTATGCGTATATTGTGGGAGGTCGTTTATAAACGATACAGCTTTACGAGGGCACGTATCCCGCGTTCATATCTCCAACTATCGCTTCGGATGCACCAAATGCGAGCAAAGATTCCGAATACAAAGCGACCTTAAAGAGCATCTGGGTAACGTGCACGGGAAAAAGGTCATTAAATGTCCCGAGTGTACTGAACTGTTCATCTCGCATTACGCCAAAAAAGTCCATGTCGTTAAGACCCACAATGGCGGACACAAATGCAAGCACTGTGGTTTGGCTTTCACAGCTTACGCCCGTATGATCAATCACGTCAGGAGACTGCACTTTAAAGAGAAGAATGTTGAGTGTTCGCTTTGCGACAAGACGTTTTTCGATAAGCAAAGGTTGAAGAATCACATGGTCATACACTTTGGGGAGAAGAGTTTCCGTTGTGATTATTGCGGGAAAACGTTTCTGAGGAAGAAAAATCTTGTTGGCCATATTAGTTTGCACCTTAAGAATGGGAATTTGTTTGATAATGGAGGAAGTTAA
- Protein Sequence
- MILTIIQVSHRKPERNLVPNEQRRRNFEILFNNTTVVPFKHRGKYLCFFCVTEMENREHLVEHNRTHLPCCTEDRSLKVMKGTQFEIKVDVSEIQCRLCFEHFENIQNIAFHLSCKHNLTYDSDTPVFLTAYRLIDFRCLICYEKLKCFRNLVRHMNSKHPINSFTCEKCDQKYNKKKDLQSHIRQYHKLAYKCSKCFENFSSNSDLIRHKTTEHISHCNICLKTFSSFRMRLKHMKNEHDTSEGGTCGFCHKLYHTKNGFLDHAAKCTVGGFKKLEVDEIVIEDKEKKDTVKDLRKWIAFIVNSTTVLPFKYFHNRFRCFYCPKEYDMCSDLKSHSTTDHPVCDVKLKCMKLKGLCPSKGMKIKVDTSLLQCKLCSDELEDFEALVEHLKGEHKVELPNCVEQFQPFKLIHDQFPCTWCGKEFRHFGSLLKHLNVDHTENRFLCVYCGRSFINDTALRGHVSRVHISNYRFGCTKCEQRFRIQSDLKEHLGNVHGKKVIKCPECTELFISHYAKKVHVVKTHNGGHKCKHCGLAFTAYARMINHVRRLHFKEKNVECSLCDKTFFDKQRLKNHMVIHFGEKSFRCDYCGKTFLRKKNLVGHISLHLKNGNLFDNGGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -