Celi008683.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026073.1:14735573-14738604[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.003 0.24 12.6 1.4 1 23 251 274 251 274 0.97 2 18 0.024 1.8 9.8 2.8 1 23 279 302 279 302 0.96 3 18 6.6 5.1e+02 2.1 4.8 2 23 306 327 305 327 0.95 4 18 0.0078 0.61 11.3 0.3 3 23 334 355 334 355 0.97 5 18 0.00015 0.012 16.7 1.0 2 23 419 441 418 441 0.96 6 18 0.00031 0.024 15.7 3.2 1 23 447 470 447 470 0.93 7 18 0.00028 0.022 15.8 2.2 1 20 473 492 473 494 0.95 8 18 0.00055 0.043 14.9 0.2 1 23 502 525 502 525 0.96 9 18 0.00016 0.012 16.6 1.0 1 23 530 553 530 553 0.95 10 18 0.027 2.1 9.6 0.1 2 23 566 587 565 587 0.93 11 18 0.0074 0.57 11.4 1.8 1 23 593 615 593 615 0.97 12 18 3 2.3e+02 3.1 0.3 2 19 621 637 620 640 0.77 13 18 0.00047 0.037 15.1 1.2 1 23 652 674 652 674 0.96 14 18 1.1 86 4.5 0.3 2 23 679 700 678 700 0.91 15 18 0.0019 0.15 13.2 0.6 1 23 711 734 711 734 0.97 16 18 0.0017 0.13 13.4 1.7 1 23 740 762 740 762 0.98 17 18 0.00025 0.02 16.0 7.3 2 23 769 790 768 790 0.96 18 18 0.023 1.8 9.8 1.5 1 23 796 819 796 819 0.96
Sequence Information
- Coding Sequence
- ATGAGTCAAATTAAAACTCCAAAACAACTGCAGAATCTAGAATGGCTAAAAACCAAGCTGAGTACACTCTGGACTGAGCCAAAGTATTGTGGTTTGTGTTTAGAGGCATCGGGTAATTTTTACCCATTAAGGATGGAGTTTGCAATAAATGAGTGCTACTCCACCAGACCTCTTAAGGAAATTGTTAGCTCTATTTTAAATTGTGATATTGAAGACTACACATCAAGTGACATTATATGTGAACAGTGCACTGAGAAAACCATACAGTCATATGTATTCATTGAAAACACCAAAAAAGTATTTAGTATACTCAGCAGTTGTGTAAATGACATACTCTCAAAAGCCACAGACATTGGCAATGAGCTAGATGAAGACTACAACCACAAATATGCCAACGTAATGATTGTAGTTGAATATGACAAGGAAACATACAAAAGTGTTGATGAGATTACTTCAGGGAACAACACAATACTTACAGATAAACCTATAAAGAGAGATGAGGTACGATCTTCACTAGAAGCATTGTCAGTCAAAAAGGAAACTGGTGGAAAAATCGAAGTACAGAACAAGGAAAACAAAGGACCTGTAATAATTCCTACTCCAAGAGTGATAAAACATCCGAGAACTAAAGAAGTGCCTAAAGAAAAACCAGCTGTAGCAACTAGAACACCGGCCGTTTCTCTCGAAGGAGGCAAAATAGTTATTGCACCATTAATAACCAACACTCCATCTGCTCCAAAATTTAACACATACAAATGCAATTCTTGCCCTAGTATCTTTACTACATACAGGTCATTAAAAGAGCATGAAAAATCATTGCACAATACTACAATATTCCAGTGTAGGTTTTGTAGTAAGAAATACAATTCTCAACAGTATTTAGATGTTCATTATGTCACCACTCACTCGAAAACAAGATGCAGGCATTGCCATGACTTATTTGACAATAATGAGTTGAATACTCATCTAAGAAAAGTTCATGAAAAGCAAGTAAATGGTTGTAAATACTGCGATCTTGTGTATTACACAGTGGAACAGTTAGAGACACATTTCAAATCTGCTCATTTGGTAAATGATATGCAGTGCAATAAGAACAAAACTCAATGTGTAATGTGTCTAAGAAACTTTAGAGATGGTGAAATAAAAATGCACAAGTGTAAATTTTCTTGTTTAGAATGCTTGGCAGTGCCATGCGTACACTACAGCTATTTAATGTCATTTAGGGAACAAATACTAAGTCATGCATCCAAAATTAGATGTCTTGATTGTGATTATACTACAAAAAGAAAAGAGCACTTAATTGCACATGTAAACCGTGAGCATTTAGATTACCATCCATTCACCTGCCACGATTGTGGAACACAGTTTTACACAAAACTAAGCTTAAAGACGCATATAGTACAATTCCATCAAGATTTTAAATGCCAGTACTGTGATCATGAATTCAAAAGCTCGAAGCTATTGCAAAATCACAGAGAGCTTTGCAAAGCTATCAGCAGGATATACAGTTGTGAAAAATGTGTTGCATCATTTGATACAGAGCCTGAGTTAAAGAAACACATAAAATTAAATCACAGTGAAATTGTCTTCCCGTGCACATTGTGCAAAAGAGAGTTCACAAATGAATCGTCATTAGAAGAACATCATGCTAGGGTACACAATGGCATTCAGTACAAGAAGCGAAGAAAATTCATTGAATGCACTCTTTGTGATATCACATTCAAAAATATTAAAGAAATGCTTCAACATGAAGAGCTCCATGACATAAACGAAATGTTCCCTTGTAAAGTCTGTTCTAAAAGCTTTCCAAGTCTCAAGAAAGTGTATATGCACAAACAGAAACACTACTCTCAAAGAACAAAATGTCCAGGCTGTCACAAACTAGTAGTATCATCATACTTCACTCAGCACAAAGCAGTTTGTCAGTATCTGAAGAGGCCGCAGGATTTACCACATGTTTGTGGTGTATGCGGTAAGGCCTTCCATGCAGAATCAACCCTTCGTGCCCATCAACAATTCCATGCAAAACCTACTCCATGTGAATACTGTAACAGATTAATTAAACCATCATCCATGAAGAAACACATAGAAATTAAACATTCAACTGATTCAGAGAGGGAAAAGCAGTTGTTTAAATGTGATGAGTGCGATTACACAGCAAAAAAGAAAGTAGACTATGAAAATCACGTCAATAAGATACATTTGAAGATAAAGCCATATATCTGTCAGATTTGTAGCAAAGCATTCTGTGGCAAATCAAGACTAGATGAACATGAGAAGACTCACACAGATGATAATATATGCTATTGCACATACTGCGGAAAAAAATTTGCTAACAAAGTGTGTCTCAAGATGCATACAAGAAGACACACAGGTGAAAAACCATATGAATGTAACATATGCTTAGAAAGATTCCGATCATCCAGTATCATGAAAACCCATAGACTGAAGAAGCATCAAGATAAGACAATACAGTGTCCGTTGTGTGAATCTATGTATCATTTAGTAGCTGAAATGAGGTTTCATGTTAAAAAAGTTCATTGGAAAAAGTCAAAGCCTTTTGACTTCAAAGAGGTTGTGCCAGAAGAGTTTTACCATTTATTTGAAGATCGCAGACTGCAGAAGTTGGGCGAATATACATAA
- Protein Sequence
- MSQIKTPKQLQNLEWLKTKLSTLWTEPKYCGLCLEASGNFYPLRMEFAINECYSTRPLKEIVSSILNCDIEDYTSSDIICEQCTEKTIQSYVFIENTKKVFSILSSCVNDILSKATDIGNELDEDYNHKYANVMIVVEYDKETYKSVDEITSGNNTILTDKPIKRDEVRSSLEALSVKKETGGKIEVQNKENKGPVIIPTPRVIKHPRTKEVPKEKPAVATRTPAVSLEGGKIVIAPLITNTPSAPKFNTYKCNSCPSIFTTYRSLKEHEKSLHNTTIFQCRFCSKKYNSQQYLDVHYVTTHSKTRCRHCHDLFDNNELNTHLRKVHEKQVNGCKYCDLVYYTVEQLETHFKSAHLVNDMQCNKNKTQCVMCLRNFRDGEIKMHKCKFSCLECLAVPCVHYSYLMSFREQILSHASKIRCLDCDYTTKRKEHLIAHVNREHLDYHPFTCHDCGTQFYTKLSLKTHIVQFHQDFKCQYCDHEFKSSKLLQNHRELCKAISRIYSCEKCVASFDTEPELKKHIKLNHSEIVFPCTLCKREFTNESSLEEHHARVHNGIQYKKRRKFIECTLCDITFKNIKEMLQHEELHDINEMFPCKVCSKSFPSLKKVYMHKQKHYSQRTKCPGCHKLVVSSYFTQHKAVCQYLKRPQDLPHVCGVCGKAFHAESTLRAHQQFHAKPTPCEYCNRLIKPSSMKKHIEIKHSTDSEREKQLFKCDECDYTAKKKVDYENHVNKIHLKIKPYICQICSKAFCGKSRLDEHEKTHTDDNICYCTYCGKKFANKVCLKMHTRRHTGEKPYECNICLERFRSSSIMKTHRLKKHQDKTIQCPLCESMYHLVAEMRFHVKKVHWKKSKPFDFKEVVPEEFYHLFEDRRLQKLGEYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -