Celi012537.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- Znf827
- Assembly
- GCA_907269065.1
- Location
- OU026076.1:16656434-16658525[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.5e-07 6.6e-05 23.8 2.5 1 23 2 24 2 24 0.98 2 11 0.00049 0.038 15.1 4.7 1 23 30 52 30 53 0.96 3 11 0.0037 0.29 12.3 0.1 2 23 175 197 174 197 0.92 4 11 7.3e-05 0.0057 17.7 0.9 1 23 218 240 218 240 0.95 5 11 4.8e-05 0.0038 18.2 0.5 1 23 244 266 244 266 0.96 6 11 0.0022 0.17 13.0 0.6 1 23 273 296 273 296 0.96 7 11 0.0032 0.25 12.5 3.9 1 23 301 324 301 324 0.95 8 11 7.8e-05 0.0061 17.6 1.0 1 23 330 353 330 353 0.96 9 11 0.00017 0.013 16.5 1.3 1 23 359 381 359 381 0.98 10 11 1.3e-06 9.9e-05 23.2 1.6 1 23 387 409 387 409 0.98 11 11 0.00043 0.034 15.2 6.2 1 23 415 437 415 438 0.96
Sequence Information
- Coding Sequence
- ATGCACCAGTGTGAGGTGTGTAAGAAATCGTATGGGAGAAAGTCGACGCTGACGGAGCACATGCGTATACACAACAACGATAGAAGATTTGTTTGCGCCTATTGTAGTAGGGCGTTTGTGCAGAAATGCAGCTGGAAGAGTCATTTAAAAACGCATCATTCCAAAAATCAGCCTTCAGTGCCGTTACCGAATAAAAATAGTCAGCTTGATAGTTGCTTGAGCGAGAAGAAAGAAACTGATGAATACGATTTTTGTTTGCTTTTAGGAGTCAACACGGTAGAAAGGAGATCGAAACACGGCGACTTTGGTGACGCGAGAGACAACGCGGCTATTATCTTGGAGTGTTCAAATGTCTGTCCGTTCCAATTTTATCAAAACGGATTCAGATGTGCGTACTGTCCCTTTCCATTGTCACCAGAATTCGGTCCCATCAAAACCCACACGCAAGAACACCAGGATAGAGCCTCAGCCCTACGCAACATGAACTCTTCTTCAGTATTCAAAGCTGACGTTACGAATCTGAAATGTGAAATCTGTCAGAAAACTATGAAAGATCTAGCAAATTTGTTTGAACACCTTATCGACGCACACGACAAGCCGTTAGTAAGGAAATACGGTCCGGGCATCGTCCCTTACCTGTTGAACGATGGATTCTTATGCGCGGACTGTGGCCTCAGCTTTGATCGATTCATGAAATTAAACAAACATATGAATCAGCACTACCCTTACTTCGTCTGCTCTGAATGCGGACAATCCTTTATCAGTGCACATAGGTTGAAAGCGCATTCCTTAATACACAAAGAGAAGCAGACGAGTTTCAAATGCTCGAAATGCGACGAAATTTTCCCTAGGTTAGCTCTTAAATTGAAACATTTAGAGTCTAAACATAACATCTTGCATCATAAATGCCCTTACTGCACCGAGACGTTTAAGCAGTACGAAGATAGACTTGCACATTTGAACGAGTGCCATGATGTCAAGATCGAATATCCATGTAAGATGTGCTCTAAAGTGTTTAAGAGTTCCTCTACTAGAGCGAGCCACGTGCGATACATTCACATTAAAAACAAACGTCACCAATGCACTGTTTGTAGCAGTATGTTTGTCACAGCGTTAGAACTGAAACGTCATATGATAAAACACGGTGGAGAGAGGACGCACCAATGTGAAGTGTGCAAGAAATCATACGGGAGGAAGTGGACGCTGACGGCACATATGCGTATACACAACAACGATAGGAGATTTGTTTGCACTTATTGTAACTGTGCATTTGTCCAGAAATGCAGCTTGGAGGGTCATATAAAAACGCACCATTCCAATAATCTGCCTTCAGATTTGAGCAAGAAGTAA
- Protein Sequence
- MHQCEVCKKSYGRKSTLTEHMRIHNNDRRFVCAYCSRAFVQKCSWKSHLKTHHSKNQPSVPLPNKNSQLDSCLSEKKETDEYDFCLLLGVNTVERRSKHGDFGDARDNAAIILECSNVCPFQFYQNGFRCAYCPFPLSPEFGPIKTHTQEHQDRASALRNMNSSSVFKADVTNLKCEICQKTMKDLANLFEHLIDAHDKPLVRKYGPGIVPYLLNDGFLCADCGLSFDRFMKLNKHMNQHYPYFVCSECGQSFISAHRLKAHSLIHKEKQTSFKCSKCDEIFPRLALKLKHLESKHNILHHKCPYCTETFKQYEDRLAHLNECHDVKIEYPCKMCSKVFKSSSTRASHVRYIHIKNKRHQCTVCSSMFVTALELKRHMIKHGGERTHQCEVCKKSYGRKWTLTAHMRIHNNDRRFVCTYCNCAFVQKCSLEGHIKTHHSNNLPSDLSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -