Celi012557.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026076.1:16716519-16719863[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.4 1.8e+02 3.5 0.7 5 20 46 61 43 63 0.87 2 20 6.1 4.7e+02 2.2 0.0 2 23 91 113 90 113 0.93 3 20 0.0053 0.41 11.8 0.4 2 23 137 158 137 158 0.97 4 20 0.0015 0.12 13.5 1.4 1 21 162 182 162 185 0.90 5 20 0.51 40 5.6 0.2 3 20 192 209 191 211 0.91 6 20 0.0089 0.69 11.1 0.5 1 23 218 241 218 241 0.94 7 20 0.0042 0.33 12.1 0.5 1 20 247 266 247 270 0.89 8 20 0.0089 0.69 11.1 4.2 1 23 274 296 274 296 0.96 9 20 2.4e-05 0.0019 19.2 0.7 1 20 302 321 302 324 0.94 10 20 9.8e-05 0.0076 17.3 3.1 1 23 330 353 330 353 0.97 11 20 0.55 42 5.5 0.6 5 20 429 444 425 446 0.86 12 20 4.1 3.1e+02 2.7 0.0 2 23 475 497 474 497 0.91 13 20 0.0035 0.27 12.4 0.7 2 23 521 542 520 542 0.98 14 20 0.0014 0.11 13.6 1.3 1 23 546 569 546 569 0.90 15 20 0.22 17 6.7 0.1 3 20 576 593 575 595 0.93 16 20 0.011 0.85 10.8 0.7 1 23 602 625 602 625 0.89 17 20 0.03 2.3 9.4 0.8 1 20 631 650 631 654 0.89 18 20 0.00037 0.029 15.5 2.8 1 23 658 680 658 680 0.96 19 20 0.00037 0.029 15.4 0.5 1 20 686 705 686 708 0.93 20 20 9.4e-05 0.0073 17.3 3.4 1 23 714 737 714 737 0.97
Sequence Information
- Coding Sequence
- ATGCCACCTGCGACACAGGGAATCTTAGTGTGGGAAATTTCCCCCAATGTCATCGCGCGGAGAAACGCCACTCTATTAGTGCAGTACACGACGGCTTATCCGTTCAGACTACCTTCCGATGATATCAGTTGTATTGTGTGCTGTAAGGAGTTCCATGATCCTGAAGAGTTTAGGCGCCACATGACTGAAGAGGAAGATCATAAATCGGCTCAGAAAATGTTGCGCTTCACCCCCTATGCTTATACAGTTAAAATCGATATCACTGTCCTGAAATGCCGTGTTTGTTTACAATACTTCGATGACGTGGTTGATATCGCCGCTCATTTGTTCACCGCACACAGCATAACCGGCCTTAACTTGCAACACGATTTAGGCGTACAACCCTTCAAAATATACAAAGATAACAATACATGTCTTTTATGCCCTGAGAAGTTTGTCAGTCTACGAGCTTTAAGCAGACACTCGCAGACACACTACTCGAAATATACGTGCGAGACTTGTGGAAAGTCTTACGGACACTTAAATGCGCTTAAAGTGCACTTTACTTTTGCACACCAAGGTTTGAAAAATCTATGCAGAACCTGTAAGAAGACGTTCGATTCTACGGGAGAAAAACAAATACATTTGGCTGAGTCGCGAAGGTGTTGGATGTACTTATGCAACGTTTGTGGAGAGAGATTCATGTCACGGAATTTGAGAATCAAGCATACACAGTCAGCGCACAATACTGACAATCACCACCCTTGTCCTGAGTGTTCAGAGGTTTTCACAGACAAAGCCAAGCGTCAGAAACATTTTGTAGCAGCCCACACGAAAAAGTTTAAATGCGCGTGCTGCGATAAAACTTTTCCTACTAACTTCTGCCTGAACAATCATTTAGCTGTACATTCGATGGAGAAGAAATTTCAATGTAGTGTTTGCTTGAAGGAATTTAGCAGATGGAAGAGTTTGAAACAGCACATGCCTATCCATATGGAGGACAAACCTTACAAGTGCACGACTTGCAATAAACAGTTCAACCAACGCGTCAGTTGGAAGACTCATATGTCGTCCTATCATCCTGAAATAGAAATGTTTCGCAATTGTGGAGACTTAAATGCTTCACATGACGAAGAAATACCTCAAAACAATTTATTTCTAGAACTAAAGAAATTGTTTGAGAAACGATCTTGCTTGGTACAGAAAATTTTCCCCAATGACATCGCGCGGAGAAACGGCACTCTATTAGTGCAGTACACGACGGCTTACCCATTCAGACTACCTTCCGACTATATCACTTGTATTGTCTGCTGCAAGGAGTTCCGTGACCCTGAAGAATTTAGGCACCACATGACGGAAGAAGAAGATCATAAATCGATTCAAAAGATGTTGTTGCGCTGCAGCCGCAACTCTTATTCAGTTAAAGTCGATATCACTGGCTTGAAATGTCGTGTTTGTTTACAAAACTTCGAAAACGTGGTCGATATCGCCGCTCATTTGTCCAACGCACACAGAATAACCGGCTTTAATCTGCAACACGATTTAGGCGTACACCCCTTTAAAATGTACAAAGATGACAATAAATGCCTCTTGTGTCCTCAGAAGTTTGTAAGTATACGCGCTTTAAGCAGGCACACGCAGACTCACTATGCGACGCATCCGTGCGAGACTTGTGGAAAGTCTTACGGAAACTTACATGCTCTTAGAGTGCATACTACATTCGCACACCAAGGTTTGAAATCTCTATGCAGAAAATGTAAAAAGGCGTTCGATTCTGCGGAAGAAAAACAAATACATTTAGCTGAATCGCGAAGGTGTTGGAGGTACTTATGTAATGTTTGTGGAGAGAGATTCATGACACAGGGTTCGAGAATCAGGCATAAACATGCAGCGCACAATACTGATAATCACCACCCTTGCCCTGAGTGTTCAGAGGTTTTCACAGAGAAAGGCAAGCGTCAGAAACATTTTGTAGCTACCCACACGAAAAAATTTAAATGCGCGTGCTGCGATAAAACTTTTTCTACTAACTTCTCGTTGAACAATCATTTAGCTGTACATTCGATGGAGAAGAAGTTTCAGTGTAGCGTTTGCTTGAAGGAATTCGGCAGATTGAGGAATTTGAAGCAGCACATGCCTGTCCATATGGAGGACAAACCATATAAGTGCAAGACTTGCAATAAACAGTTCAACCAACGCGTCAGTTGGAAGACTCATATGTCGTCCTATCATCCTGAAATAGAAGCGCCTACACCTACACCAAACTAA
- Protein Sequence
- MPPATQGILVWEISPNVIARRNATLLVQYTTAYPFRLPSDDISCIVCCKEFHDPEEFRRHMTEEEDHKSAQKMLRFTPYAYTVKIDITVLKCRVCLQYFDDVVDIAAHLFTAHSITGLNLQHDLGVQPFKIYKDNNTCLLCPEKFVSLRALSRHSQTHYSKYTCETCGKSYGHLNALKVHFTFAHQGLKNLCRTCKKTFDSTGEKQIHLAESRRCWMYLCNVCGERFMSRNLRIKHTQSAHNTDNHHPCPECSEVFTDKAKRQKHFVAAHTKKFKCACCDKTFPTNFCLNNHLAVHSMEKKFQCSVCLKEFSRWKSLKQHMPIHMEDKPYKCTTCNKQFNQRVSWKTHMSSYHPEIEMFRNCGDLNASHDEEIPQNNLFLELKKLFEKRSCLVQKIFPNDIARRNGTLLVQYTTAYPFRLPSDYITCIVCCKEFRDPEEFRHHMTEEEDHKSIQKMLLRCSRNSYSVKVDITGLKCRVCLQNFENVVDIAAHLSNAHRITGFNLQHDLGVHPFKMYKDDNKCLLCPQKFVSIRALSRHTQTHYATHPCETCGKSYGNLHALRVHTTFAHQGLKSLCRKCKKAFDSAEEKQIHLAESRRCWRYLCNVCGERFMTQGSRIRHKHAAHNTDNHHPCPECSEVFTEKGKRQKHFVATHTKKFKCACCDKTFSTNFSLNNHLAVHSMEKKFQCSVCLKEFGRLRNLKQHMPVHMEDKPYKCKTCNKQFNQRVSWKTHMSSYHPEIEAPTPTPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -