Celi000461.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026067.1:6157701-6159284[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.3 4.1e+02 2.4 0.1 2 23 214 236 213 236 0.88 2 10 0.00027 0.021 15.8 1.8 1 23 242 264 242 264 0.98 3 10 0.00013 0.01 16.9 4.7 1 23 270 292 270 292 0.98 4 10 0.0011 0.089 13.9 0.0 2 20 299 317 298 319 0.94 5 10 1.3e-06 0.0001 23.1 1.3 2 23 338 359 337 359 0.95 6 10 1.6e-06 0.00012 22.9 2.7 1 23 366 388 366 388 0.98 7 10 4.5e-06 0.00035 21.5 2.7 1 23 394 416 394 416 0.97 8 10 2.8e-06 0.00022 22.1 0.7 1 23 422 444 422 444 0.97 9 10 0.00016 0.012 16.6 5.8 1 23 450 472 450 472 0.98 10 10 4.9e-05 0.0038 18.2 3.2 1 23 478 501 478 501 0.97
Sequence Information
- Coding Sequence
- ATGTCTGACGAAGAAGAAACTCATTGCCGCCTTTGCGCTGAAACAACACCGAAAACGGGTCTAATATCGCCCGATGAAGATGTCGCAACGACTTCCATGATCGTAACAAAAATGCTTTGGATAAACATTGACATTAATTCATCATCTATCCTTCCAAACTCGATTTGTTTTTCATGTTTCGATCAATTAGAGCGCACTTACCTTTTCCTGAACACCGTACGTACAGCTCAAGCTAAACTACAAGAAATATACATAAAAAAAGATGACGATGTTGTGAAGTTAGATTTGCCTAACGAAATAGGAAAACCAGTAGATAAGGACTGGGACGACTTTGAAGAGACGAAACCTGATATTAAAGATGAGAATGAAGAAGTGGACGTGCAAATTTTGGCTGTAGAAAATTATGCCAATACACTTCTAAATTTAGGCATCAGACAAAACATTAAAGCAGAGCGAGATAGCTATGATATCCTCAATGATTCTAACGGCTTCAAGTCTTCTGACGATGAAGATGAACCTCTTTTGACTGTAGCGAAGAAGAAAAAGTCCAAGAAAAAGATTAAGTTCAAAGAAGATATTTTAGACGGTATAGCCCCAACACTGCCCTATCCTATCCTCACTTGGGATGATTATACATGGAGATGCGGTAACTGCGAGGCTCTTTTCCAAAATGTGCAGTCGTTACGCCTCCATTCGTTACAAATACACACTGTCTGCTGCATTTTTAAGTGCAACGAATGTGGTAAGAATATTACTAACTTCAGAATGTTCATCAAACATGTCCGAAATCACAAGAAGCTGTTACGTTACTGCTGCGAACTATGCAATGAACGGTTTAATCGCAGTGTGTACTTGAAGAAACACTACTCAACGCACAAACATGACCTATACTTAATGTGTGAGAACTGTGGTTCATCATTTGAGACTCCAGATGAGTTACAAGACCATATTGTATTGTACACAAAAGGTTTCAAGCGAAAACTACCATTAAAAGGCGAAGTAGTTGATCTAAAATGTGATGTGTGCGACAAAGAGTTTAAAACACGAAGCAATCTACAACAACACAAGTTATTGCACACTGTGCGATCACGAGATTTCTCTTGCCATGTGTGCGGTAAAATGTTTTTCACAAAAGGGACACTAAGCACTCATATCATGACTCACGAAGATGTTAAACCATTCAAGTGTGAACATTGTTCGATGTCTTTTCGATCCCGTGGTAACCTACAATCTCATATAAGCTTACACTCTGGAACAAAACCGTTTGTATGTGAGCAGTGCGGCAAAAGTTTCCGTGTTAAAAGACTACTTAAATCTCATTATATAGTTCATACAGACTTAAAGCCTTTCGTATGCCAACATTGCAATAAGACATTCCGTTTCAAAACACGTCTAAACCTCCACTTGAGGCAGCATACAGGAGCTAAACCATACAACTGTGTTTATTGCCAAAGAGATTTCACAAACGGATCAAACTATAAGAAACATATGAAAAGAAGGCACAATATCGATACGTCGAAACGGAAGTTCATGAATGTTGTTGGTGAGGAAAATAATGTTAATAATGCTATTGAGCAATCATGA
- Protein Sequence
- MSDEEETHCRLCAETTPKTGLISPDEDVATTSMIVTKMLWINIDINSSSILPNSICFSCFDQLERTYLFLNTVRTAQAKLQEIYIKKDDDVVKLDLPNEIGKPVDKDWDDFEETKPDIKDENEEVDVQILAVENYANTLLNLGIRQNIKAERDSYDILNDSNGFKSSDDEDEPLLTVAKKKKSKKKIKFKEDILDGIAPTLPYPILTWDDYTWRCGNCEALFQNVQSLRLHSLQIHTVCCIFKCNECGKNITNFRMFIKHVRNHKKLLRYCCELCNERFNRSVYLKKHYSTHKHDLYLMCENCGSSFETPDELQDHIVLYTKGFKRKLPLKGEVVDLKCDVCDKEFKTRSNLQQHKLLHTVRSRDFSCHVCGKMFFTKGTLSTHIMTHEDVKPFKCEHCSMSFRSRGNLQSHISLHSGTKPFVCEQCGKSFRVKRLLKSHYIVHTDLKPFVCQHCNKTFRFKTRLNLHLRQHTGAKPYNCVYCQRDFTNGSNYKKHMKRRHNIDTSKRKFMNVVGEENNVNNAIEQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01172607;
- 90% Identity
- -
- 80% Identity
- -