Celi008678.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026073.1:14719858-14723146[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.3e-06 0.00064 20.6 4.3 1 23 207 229 207 229 0.98 2 17 0.068 5.3 8.3 0.0 1 23 259 282 259 282 0.97 3 17 0.9 70 4.8 0.3 2 23 340 362 339 362 0.91 4 17 0.022 1.7 9.9 0.2 1 23 368 391 368 391 0.94 5 17 1.7 1.3e+02 3.9 1.4 2 19 396 412 395 415 0.85 6 17 0.00064 0.049 14.7 0.1 1 23 423 446 423 446 0.95 7 17 0.79 62 5.0 0.7 2 23 451 473 450 473 0.90 8 17 2.6e-05 0.002 19.1 0.5 2 23 486 507 485 507 0.96 9 17 0.0015 0.12 13.5 0.8 1 23 513 535 513 535 0.98 10 17 0.35 27 6.1 0.3 2 23 541 561 541 561 0.94 11 17 0.00019 0.015 16.3 1.3 2 23 568 589 567 589 0.97 12 17 0.0013 0.097 13.8 0.0 2 23 594 614 593 614 0.96 13 17 0.33 26 6.1 0.8 2 23 633 654 632 655 0.94 14 17 0.00011 0.0084 17.1 2.3 1 23 661 683 661 683 0.98 15 17 3.4e-05 0.0026 18.7 0.7 2 23 690 711 689 711 0.96 16 17 0.0031 0.24 12.5 0.4 1 23 717 740 717 740 0.93 17 17 0.0025 0.19 12.8 0.1 3 23 747 768 745 768 0.95
Sequence Information
- Coding Sequence
- ATGGAAAGCCTGGAAAAATTGACTTTAAACCACCAAGATTGTATAAAAAGGAAATTAAAAAATGTACTAAGCTCAGAGCCATTCTGCAACCTATGCTACGAGACTGACAAAAGTTTTATTTCCTTGAACGAAAAGCTGAAGATAGTCACTGATGATTGGACACAAGATATATGCCTTAAAGATGTCTACAGCTATATTTTTAATGAGATGGAAAACTTACCAGCCAGGGAAAACATTTGTAGTGAATGCACTGAGCAACTTCAACAATCATACATCTTCATAAAAAATGCTAAATTGATCACTGGACTGTTAGTCACCTATATTGACGATTTAGAATCAAAATCAAACGATTTGATCACCCATTTGGTTAAAAACAACAGATTTAAAAGTACAAACATTGTCATTGTATTAGAAAATAATAACATCAATAAATATTTGCCTAAAGATTTTGATGATACAGTAAGACACAGTAAAGCTAAGAAAATTGAAGCTAATATTACTCCAAGAACAAAACTAAAATCGGATCTAGAGGTAAGTTTCAAGCGCCTTGATTGCAGTAAAGAGCTACCAACGCTTTGGCTATGGAAACAGCACACAACAGAGTATCGTCAACAAGATTTTAAGTGTAACATTTGTTTTAAAACATTTAAAAATCAACAGTATTTGACCTCCCACTACAAAGTGCACTCTAAACTTATATGCAAGATCTGTCATTTAATTGTACCAGATGGACAAGTTAAAGATCATATGAGAAAAGAACACAAAGGTAATGTTTTTGTGTGTAATATCTGTGCTGATGTTTTTTATACTTTGCGAGGCTTAGCAACACATGTAAAAATTGTGCACACTATCAAAAAAGAGGGTAGAACAAAATGTGACACTTCCCTTCTCGATTTAGATGATAATGAACCACATGATTGTGAACTCAAATGTTTTGAATGCATTGAAGCACCATGCATACATAACAAATATTTAATATCATATAGAGAGCAAGTTCTTAATCATGTTTCCAAAGTAAAATGTCTAGATTGTGATTATGTTTGTAGAGAAAAAGAGATTTTAATAGGTCATGTGAACAGGGAACATCTGAACCACCACCCTTACATTTGTAATGAATGTGGACAGCAATTTTATGCTAAAGCTATTCTAAAAACGCATATTCAAGGCTACCATAGAGAAATTGATACATGCAAACATTGTGACTTAAATTATAATCACTTGACTTTGAGAAAACATGAAGTTACTTGCAAAATATATAAACGAGGATTTGTCTGCCCAATTTGTCAAGCGTCTTTTGCCTCCGATGAAGATTTAGCAAAGCATGAAAAACAAAGGCACACGGAAGTACTCCCATGTGGAATGTGCAAAAAAGTGTTTCTGAAAGAATCTAAGAGGAAAGCACACACGTCCAAAGTACACAGCGGGTTACAAATCAAGAATAAACTATCGAAGTTAGAATGCGTAGTTTGTGAGAAAATGTTCGATACAAAAGGAGAATTGATGCGCCATAGGAAAAAGCACGGTCCTAACGTAAAATACCCGTGTAGGATATGCAATACTGAGTACGTATCCTTGCGGAAACTGAGAGCGCACAGTCGAAAACACGTTGGACCTTTTGCGACTTGCGACATCTGCGGAAAAGAGATGAGAAAAGTCTTAATAGAGAAACATATTAAAAACCACGAATTCGACGGCATTGTGAGCTGCACCACTTGTGGAAAGTCTTTCCAAAACCTTGCCATGCTTAAATACCATAAGAAATCGCATCTAGATAACATCCCTTGCCCTATTTGTGGCAAAATGATAAATCCAGCGAAACTGCGTCGCCACGTCAAAGTACATGAGATTGAAGAGAATCCTTCATTGAAAGAAAATCAAAGGCAGAAAGCTACTATGAAATGCGAATTCTGCGACTACGTAACATGGAATAACATAGTATTAGAAAGTCATATGAATCGGCATCACTTTAAAACGAAGCCTTACGTTTGTCACATATGTAGCAAAGATTTCTTCGGCAATAATTTGCTGAAGAAACACATCCAATCGCACACGTTAAACAAAAGTGTAGTCTGTATGGTTTGCGGTAAAACATTCGCAAATGCAACGTGTCTTAAATTACATTTAAGACTGCATACGGGAGAGAAGAATTACCCTTGTGACGTGTGCGGCGAAAAGTTCCGATCGTCCAGTATAATGAACGTTCACAAACTAAAACGACACGCGGATAAAGAAATCGCTTGCCCTCTTTGCCCTAGCAAGTTTTATACTTTGGGAGAATTGCGAAGGCATGTTATAAAAGTACATTGGAAGGATAAGGGGAAAAAGTTTGATCCTAGAGAGCTGAAAGGTTTGGAGAATCATTATCATCTGTTTCATGATGGCAGGAGAGTCAAGATGGGCGACGATGTTGATTTTTATATTCCTTGTACCAATAATCTGGAGTAG
- Protein Sequence
- MESLEKLTLNHQDCIKRKLKNVLSSEPFCNLCYETDKSFISLNEKLKIVTDDWTQDICLKDVYSYIFNEMENLPARENICSECTEQLQQSYIFIKNAKLITGLLVTYIDDLESKSNDLITHLVKNNRFKSTNIVIVLENNNINKYLPKDFDDTVRHSKAKKIEANITPRTKLKSDLEVSFKRLDCSKELPTLWLWKQHTTEYRQQDFKCNICFKTFKNQQYLTSHYKVHSKLICKICHLIVPDGQVKDHMRKEHKGNVFVCNICADVFYTLRGLATHVKIVHTIKKEGRTKCDTSLLDLDDNEPHDCELKCFECIEAPCIHNKYLISYREQVLNHVSKVKCLDCDYVCREKEILIGHVNREHLNHHPYICNECGQQFYAKAILKTHIQGYHREIDTCKHCDLNYNHLTLRKHEVTCKIYKRGFVCPICQASFASDEDLAKHEKQRHTEVLPCGMCKKVFLKESKRKAHTSKVHSGLQIKNKLSKLECVVCEKMFDTKGELMRHRKKHGPNVKYPCRICNTEYVSLRKLRAHSRKHVGPFATCDICGKEMRKVLIEKHIKNHEFDGIVSCTTCGKSFQNLAMLKYHKKSHLDNIPCPICGKMINPAKLRRHVKVHEIEENPSLKENQRQKATMKCEFCDYVTWNNIVLESHMNRHHFKTKPYVCHICSKDFFGNNLLKKHIQSHTLNKSVVCMVCGKTFANATCLKLHLRLHTGEKNYPCDVCGEKFRSSSIMNVHKLKRHADKEIACPLCPSKFYTLGELRRHVIKVHWKDKGKKFDPRELKGLENHYHLFHDGRRVKMGDDVDFYIPCTNNLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -