Celi012543.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026076.1:16679131-16682748[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5 3.9e+02 2.4 0.1 1 21 51 71 51 73 0.76 2 18 8.8 6.9e+02 1.7 0.0 2 23 96 118 95 118 0.90 3 18 7.6e-05 0.0059 17.6 0.9 1 23 140 162 140 162 0.98 4 18 3.1e-05 0.0024 18.8 0.5 2 23 167 189 166 189 0.94 5 18 0.016 1.2 10.3 1.1 2 23 198 220 197 220 0.93 6 18 0.00076 0.059 14.5 2.6 1 23 225 248 225 248 0.96 7 18 2.6 2e+02 3.3 2.0 1 23 254 277 254 277 0.89 8 18 4.8e-06 0.00037 21.4 0.2 1 23 283 305 283 305 0.97 9 18 4.6e-06 0.00036 21.4 2.9 1 23 311 333 311 333 0.98 10 18 8.2 6.4e+02 1.8 0.5 2 23 430 452 429 452 0.90 11 18 5.7e-05 0.0044 18.0 0.5 2 23 474 495 473 495 0.96 12 18 5.1e-05 0.0039 18.2 1.3 1 23 499 521 499 521 0.96 13 18 0.049 3.8 8.8 1.3 1 23 528 551 528 551 0.95 14 18 0.0047 0.36 12.0 2.6 1 23 556 579 556 579 0.95 15 18 0.00095 0.074 14.2 0.7 1 23 585 608 585 608 0.94 16 18 0.33 25 6.2 3.5 1 23 614 636 614 636 0.94 17 18 9.6e-07 7.5e-05 23.6 1.3 1 23 642 664 642 664 0.99 18 18 0.27 21 6.5 11.4 1 23 670 692 670 693 0.96
Sequence Information
- Coding Sequence
- ATGAAAGACTCGAAAAACACTAAACAGATAGGGCCCGTCACGCTCACTGTAAAATGGAGGCCCGTACGCAAGTATAACGACGAGAGAGACAATGCGGCTATTATTCTAGAATGTTCCAATGTCTGTCCATTCAAATGGAACCGTGGTACATTCGTTTGTTCGTACTGCTCACTAACCTCGGCTGATTTTGGTCCTATCAGGGAACATGTGATAGATCATCCGAACAGGGTCGAGGCGTTGCGTCTAGCGCGAGGCGCCACAATCAAAGCTGACGTCACTGATTTAAAATGCGAACTCTGCCTTCAAAACATTAAAGACTTACCGACGTTAGTCGATCACTTAATTGAAGCACACAATAAATCTCTTCAAAAAAAATACGGGCCTGGCGTCGTGCCTTTCCTCATCAACGGAGATGTTTTCAAATGCTCCGTCTGCGACAGGTCTTTCGATCTGTTCATTAATTTAAATAAGCATTTGAACGAACACTATCCTAATAGCGTATGCTCGTTATGCGGCAAATCATTTTCGCAATTAACGAGGCTGAAAGCCCACATACTTTACACGCACGAAAAGGAGAGACAGATGCGGTGCGCTTGCACGAAATGCGGTGAAATCTTCACCAGCATACCCGACAAAAATAAACATATGGTGTCGAAACACGGTGTTCTAAAACATAAGTGTCCGTATTGTAGCGAATCGTTTAAATCATACCCTGCAAGGATGAAGCACATGAAGGAATACCATGATAAGAAAATCGAATATCGATGTAATATGTGCTCTGCGGTGTTCCTACTCTGCAGTCAAAGAACCAAGCATGTCCAGCAGGTACATATCAAAGATAAACGGTTTGCCTGCACTGAGTGTCCGTATCGGTTTGTCACGGCGGCATCTTTAAGGAATCACATGATCAAACACGGCGGGGAAAGGAAACACCAATGCCAAGTTTGTAAGAAAGCTTACGCTAGAAAGAAGACGTTGAAGGAACACATGCGCATACACAATAATGATCGGAGATATGTTTGTGCGCATTGCCATAGCCGTGTTAAATGGAAGCGAAGGACAGACGGCATCATTAACGATGCCCGAGACAACGCGGCTATTATCTTAGAGTGTTCCAACGTGTGCCCCTTTAAATGGCGTAGAAATGTATTTGGTTGCTCGTTTTGTCCCTTTGCTTCAGCGGAATTCATACCGATCAGGGATCATTATAAGGAACACCCTAACAAATGTGAAGCTCTAAATATGGCGCGTCCAACAATAAAGCTCAAGGCAGATGTTACCGATTTGAAATGTGAACTATGTCACGATAACGTAAAAGACATAACAACATTGTTCGAACACCTAATAGAAACGCACAAAAAGATAATGAACAAACAATTCGGTCCCGGTATCTTACCTTACCTCTTAAAAGATGGACTAACATGCGCCAATTGTGGCCTAAGTTTTGAAACCTTCACGAATTTGAACAGGCATTTGAATGAACACTATCCCAATTTCGTATGCTCTAAGTGTGGAAAGGCTTTTTCTGATGGAGATAAGTTGAGACACCATAACGAAATGCATGACAAGAAAACGCCACGGTATCAATGCTCTAAATGCGATGATGTTTTAACCTCAAGCTACCGCTTGAGTAAACATAAAATGTTAAACCACGGTATGGCGATGTATAAATGCCCATACTGCAGCGAAACTTTTAAGTTATACGCTCATAGATCGGAGCATATGAATGACCGCCACGGCACGAAGTTAGAGTTTCCGTGCAGTATGTGCCCTAAAGTATTTAAGACGACCAGCTCGAGGGCTTCCCACAAACAACAGGTTCACATAAGAGATAAACGACATTCATGCACCATATGCTGTAGCTTGTTCATAGATTCCTCGCAGTTGAAGGATCATATGGTGAAACATGGCGGGGAGAGGAAGTTCCAATGCGATGTATGCAAAAAAGCTTACGCGAGAAGAAAGACTTTGAGGGAACACATGCGTATGCATAACAACGATAGACGATTTGTCTGTTTTCATTGTAATTGTGCGTTTCTGCAGAAGTGTAGTTTGAAGAGTCATATGAAAACTCATCACCCTCACGCGGAGCCTTTGCCCTTTGGGGGACCATAA
- Protein Sequence
- MKDSKNTKQIGPVTLTVKWRPVRKYNDERDNAAIILECSNVCPFKWNRGTFVCSYCSLTSADFGPIREHVIDHPNRVEALRLARGATIKADVTDLKCELCLQNIKDLPTLVDHLIEAHNKSLQKKYGPGVVPFLINGDVFKCSVCDRSFDLFINLNKHLNEHYPNSVCSLCGKSFSQLTRLKAHILYTHEKERQMRCACTKCGEIFTSIPDKNKHMVSKHGVLKHKCPYCSESFKSYPARMKHMKEYHDKKIEYRCNMCSAVFLLCSQRTKHVQQVHIKDKRFACTECPYRFVTAASLRNHMIKHGGERKHQCQVCKKAYARKKTLKEHMRIHNNDRRYVCAHCHSRVKWKRRTDGIINDARDNAAIILECSNVCPFKWRRNVFGCSFCPFASAEFIPIRDHYKEHPNKCEALNMARPTIKLKADVTDLKCELCHDNVKDITTLFEHLIETHKKIMNKQFGPGILPYLLKDGLTCANCGLSFETFTNLNRHLNEHYPNFVCSKCGKAFSDGDKLRHHNEMHDKKTPRYQCSKCDDVLTSSYRLSKHKMLNHGMAMYKCPYCSETFKLYAHRSEHMNDRHGTKLEFPCSMCPKVFKTTSSRASHKQQVHIRDKRHSCTICCSLFIDSSQLKDHMVKHGGERKFQCDVCKKAYARRKTLREHMRMHNNDRRFVCFHCNCAFLQKCSLKSHMKTHHPHAEPLPFGGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -