Basic Information

Insect: Crocallis elinguaria
Gene Symbol: -
Assembly: GCA_907269065.1
Location: OU026077.1:9720155-9734491[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.69 54 5.2 3.7 1 21 160 180 160 181 0.94

2 12 0.014 1.1 10.5 0.6 2 20 195 213 194 215 0.96

3 12 0.0012 0.093 13.8 3.4 1 23 256 278 256 278 0.97

4 12 0.046 3.6 8.8 0.2 2 20 381 399 380 401 0.88

5 12 0.00025 0.019 16.0 1.9 1 23 409 432 409 432 0.97

6 12 8.3e-05 0.0065 17.5 1.8 1 23 455 477 455 477 0.98

7 12 1.3e-06 9.8e-05 23.2 1.9 1 23 484 506 484 506 0.98

8 12 4.2e-07 3.2e-05 24.7 1.7 3 23 520 540 518 540 0.96

9 12 1.5e-07 1.2e-05 26.1 0.7 1 23 546 568 546 568 0.99

10 12 4.6e-07 3.5e-05 24.6 2.5 2 23 575 596 574 596 0.96

11 12 1.5e-07 1.2e-05 26.1 1.5 1 23 602 624 602 624 0.99

12 12 5.7e-05 0.0044 18.0 0.1 1 23 630 652 630 652 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.69	54	5.2	3.7	1	21	160	180	160	181	0.94
2	12	0.014	1.1	10.5	0.6	2	20	195	213	194	215	0.96
3	12	0.0012	0.093	13.8	3.4	1	23	256	278	256	278	0.97
4	12	0.046	3.6	8.8	0.2	2	20	381	399	380	401	0.88
5	12	0.00025	0.019	16.0	1.9	1	23	409	432	409	432	0.97
6	12	8.3e-05	0.0065	17.5	1.8	1	23	455	477	455	477	0.98
7	12	1.3e-06	9.8e-05	23.2	1.9	1	23	484	506	484	506	0.98
8	12	4.2e-07	3.2e-05	24.7	1.7	3	23	520	540	518	540	0.96
9	12	1.5e-07	1.2e-05	26.1	0.7	1	23	546	568	546	568	0.99
10	12	4.6e-07	3.5e-05	24.6	2.5	2	23	575	596	574	596	0.96
11	12	1.5e-07	1.2e-05	26.1	1.5	1	23	602	624	602	624	0.99
12	12	5.7e-05	0.0044	18.0	0.1	1	23	630	652	630	652	0.98

Sequence Information

Coding Sequence: ATGGCCTCCCATAATAATAAAAAAATTGAAATAAAGGTTGAGAAATTATGCCGCACGTGTCTCTCGAAAGACAATGAGTTAAATTCTCTATTCGATGTGGCGGTTGGAACTGTTTCCCTGGACTTCGTGGTAACCGCAATTACCGGATTAAAGATCCGTAAAGGAGATGGGCTGCCGGCGACAATATGCTGCGAATGTAAAGACAAGGCTGAGAAGGCATATGAATTTAAAAAGAAATCGCAGGAGGCGCATATTTCTCTTCGAGGTTTTTACAAGAAAGACACTAAAGTCTTACAAAAAACAGAAGATAACAAGCCAATGGATGTAAAAACCGAACATTCAACTTTTGATGATAATGATGATTTCTCTGATACTGATTACTGCTTTCCACTCAGCGACAATACAGATGAAACAAATGCTATGAATATTGAAGTAACAGTGAAATGTGAGGGAGGTGAAAAAGAGGATGGTTCATTTTTTGAATGCAAAAAGTGCTGTCTAGTATTCAATACAGTTAGTCAGTTTCAAGAACATAAAAAAAAGAAATGTTTGAAAGTTGAATATGAAGACGTGAATGGAACGTACTGTCCCATTTGCGGCACTTGCTATGACGGTGACCATAGTCTGTCGAAGCATATGTGGGAGTTTCACGCTGATTTAATGGGGCCAAAGAAAAGGGGACGACCCAAAAAACTTATGACGACGACGATATTAAATAAGTTGTCAGAAAACGGTTTACTTATTTCGTCAACACAAGGAAAAACATTTAAGTGTTCATTTTGTAAGAAACAAACAAAAACCAAAGAAGATTTGAGTATTCACATGTTCCAACATAAAGATACAAAAGTAATATGCTGCATCTTGTGCAAGAAAATGTTTTTGAAAAAGAAATTCTTTAATTCCCATTTGTGTCTTGGCAAAAATGCTTCCATTGCAACAGAAAATGATTCATCAAATACACCAGTAGAAAAAAACGGAATGATGGCGTTCGCGACAGAAATACATCTGCAAGAGCTGTTTGATCCAACTGGTGATATGACGCTGACTATGATTCAAGTGTGCACTGTTTGCACTGGCATTTACCTTTCCGAAGCGGAACTCATCAATCATCACGACGCTGACCATCCCGAGCTTTCTTTACGATGCAATCATTGCTCAAAGATGTTCGCTTCTGTGAGGACAGCGGCTCGCCACAGAGTTGTTTGCAAACAAATAGAGAGGATGCACAAATGTACTACGTGTGGCCTTAAGTTTGCCTACGAAATATCGCTCAATAAACACATCCTCAGATACCACCAAGGACAGAGCGTGTCTGTTGCGTTTATGAGCCGAAGAGTACCAAAGACCACCGAAAACGTACAGTATCAATGTGATACGTGCCAAAAAATATTCCATAGGAAAGAAGCTCTTGCGAAACATGCTAAACTGCACATGCCCAACCAAAAACTTTATGAATGTGATATCTGCCAGAGGAAGTTCAATCGCAGTGACAATTTACGAACTCATAAGAAGATCCACGATGTGGACCGAGCTAAGCCGCCGGCTAACAATTGCCTCTGCCTGTACTGCGGCCGCGGATTTTCAAACTCGTCCAATCTGATCGTGCATATGCGCCGGCACACTGGAGAAAAGCCGTATAAGTGTGATTTTTGCGGGAAAGGTTTCCCAAGATCTTCAGATCTTATGGTTCATAGAAGATCACACACTGGTGAGAAACCTTGCGTGTGTCGCATTTGTGGCAAAGCGTTCTCACGCAGCAACAAGCTGTCGCGGCATATGCGCGTACACACCGGTCAAAGGCCGTATAAGTGCACATACTGCGAAAAAGCCTTCTCTCAGAGCAATGATCTGACTTTACACATCCGACGCCACACTGGGGACAAACCTTATGTCTGTGAAGTGTGCGGCGAAAGATTTATTCAGGGCACAGCTCTGCAGAACCACCGACGCGCGCACGGCCATTTCCCGCCGCCTCCGCCAGATCTCGCCAACCTTACCAACCAAGTGCAGGCTATCACGTACAGTGTGTCTAATCTGTCTAACCTTTCTAATATCAATCTCCAACAAGGAACTCACATGCCCAACTAG
Protein Sequence: MASHNNKKIEIKVEKLCRTCLSKDNELNSLFDVAVGTVSLDFVVTAITGLKIRKGDGLPATICCECKDKAEKAYEFKKKSQEAHISLRGFYKKDTKVLQKTEDNKPMDVKTEHSTFDDNDDFSDTDYCFPLSDNTDETNAMNIEVTVKCEGGEKEDGSFFECKKCCLVFNTVSQFQEHKKKKCLKVEYEDVNGTYCPICGTCYDGDHSLSKHMWEFHADLMGPKKRGRPKKLMTTTILNKLSENGLLISSTQGKTFKCSFCKKQTKTKEDLSIHMFQHKDTKVICCILCKKMFLKKKFFNSHLCLGKNASIATENDSSNTPVEKNGMMAFATEIHLQELFDPTGDMTLTMIQVCTVCTGIYLSEAELINHHDADHPELSLRCNHCSKMFASVRTAARHRVVCKQIERMHKCTTCGLKFAYEISLNKHILRYHQGQSVSVAFMSRRVPKTTENVQYQCDTCQKIFHRKEALAKHAKLHMPNQKLYECDICQRKFNRSDNLRTHKKIHDVDRAKPPANNCLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLMVHRRSHTGEKPCVCRICGKAFSRSNKLSRHMRVHTGQRPYKCTYCEKAFSQSNDLTLHIRRHTGDKPYVCEVCGERFIQGTALQNHRRAHGHFPPPPPDLANLTNQVQAITYSVSNLSNLSNINLQQGTHMPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00044719;
90% Identity: -
80% Identity: -