Celi012586.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026076.1:16914409-16918862[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.7e-05 0.0028 18.6 0.6 1 23 99 122 99 122 0.97 2 17 0.12 9.4 7.5 0.0 2 23 149 170 148 170 0.96 3 17 0.028 2.2 9.5 0.2 2 23 195 217 194 217 0.94 4 17 0.00086 0.067 14.3 0.9 1 23 221 244 221 244 0.96 5 17 1.8 1.4e+02 3.8 3.0 1 19 249 267 249 272 0.79 6 17 0.041 3.2 9.0 4.9 2 23 279 301 278 301 0.96 7 17 0.35 27 6.1 0.1 2 15 309 322 308 324 0.89 8 17 0.012 0.95 10.7 1.5 1 23 482 505 482 505 0.93 9 17 0.17 13 7.1 0.2 2 23 532 554 531 554 0.94 10 17 0.003 0.23 12.6 0.1 1 23 602 624 602 624 0.91 11 17 3.4e-05 0.0027 18.7 0.9 1 23 629 652 629 652 0.98 12 17 0.86 67 4.9 3.0 1 23 658 681 658 681 0.94 13 17 0.00025 0.019 16.0 0.3 3 23 690 711 688 711 0.93 14 17 6.5e-06 0.0005 21.0 1.1 1 23 717 739 717 739 0.98 15 17 3.5e-08 2.7e-06 28.1 1.7 1 23 745 767 745 767 0.99 16 17 0.00062 0.048 14.7 0.7 1 23 773 795 773 795 0.96 17 17 0.00011 0.0087 17.1 0.1 1 23 799 822 799 822 0.95
Sequence Information
- Coding Sequence
- ATGTTGAGATGCGCGAGCGAGAAAGCGGCGGCGTGGAGTATCCTGGCCTTAATACTATTTTGTAACGAACGAGCGGGTTGTTTACCTGATGGTGAACGGCAACCGAATGCCGAAAAGGCCGTCACAGAATATGTAACAACAATAACGGAAGCCGAAACGACAACAACAAAAGAGTTAGCGACAACACAGAATGATAATGAAGATATAGACGAGATAGCGAAGCAAGTGCACAACTTGAGAGCGATTCTGATGTCGACGAACGCAACGCCAATACGACGCTTTACCACCAAAGGTTACGTATGCAGCTTCTGCCGTAAACAATTCAACGATCCCGCTGACCTTAAACAACACACTCTAACAGAACACGACAATGAAACAAAAGAAACGATACTGAAAAAGATAGATTTCAGACATGTGACAATCAAATTGGACATCACATCTTTAGAATGCAACATATGCTATGAAGCGATCGGTAACTTAGAAGAGCTTAATGTACACCTTAAAGGACACGGAAAAGTCATATACACCGATGTAAACACAACATACATACTACTGCCATTTAAATTCGATGATGTTTTGCTGAAATGCGCCATCTGCGATACAGCAGAGTTCACTAACACGCCGTCTCTACAGAACCACATGTACACGCATTACAAGAAACATGAGTGTAAAATTTGCGGAGAGGGATTCGCGAGCCCCAAAATGATCTCCAATCACTACAAACGGAGACACAATTTGGGTGAATTCAGATGCGAGTATTGTCCGTTTATATTCGAAACTAGATACAAGAAAAGGTGCCATGTGATCTCAGCGCATGAGGAGTTGAAGCGGCTGAAATGCGGTTACTGCAAAAGAAGTTTCCAGTCGTATGATAAGAAGTGCACGCATATGCTAACGCAGCACGACGTGATCCTACCTATATTGGAATGTAATGCTTGCGGCAAAGCTTTCAGTTTCCTAAGTAACGTCGGTAAGGTGGCAATTAAGAGTGAAGTGGAAACCAACTGGGGACTAACAATTAAGAAGATTAAATCAGAAACCGATCCAAACAAAACAAATGAAATAGAATGTCCACCGCAAGTTACTAGACTAAACTTTAGATTGCCAGATGTAATAGATACACCGAGTGATAGCAATGGAGACGCTAAACACAAAAGGCGATGTAACACTAAAAACAAATTACAACAGGTTAACTTTAAAATAACGAGTGTGACACAAGTACAAAATGAAATACGGCAAGCGATTGGTAATAGGAACGTTAAAGGTGCTGTTAAACCCAAAGCACGAAAGGTTGCGCTAAAAATAGAGCTGAATCCAACTCCAGATGTTAAGGATGGCGAGTTGAAAACCTCGCTCGAGTTGGACAAACACCGACACAACATACGAATGATCATGCACTATTCGAATGCTACTCCAATCAGAACTCACTACGTCGGTAACGGTTACGCTTGCTGTTTCTGCGATCAGTTCTTCCCCAAAGCTGCCGACCTTAAATCACACACCATACAAAATCACGACAAGAAAGAAAAGATAAAATTCATGCAGAAAGCCTTCCTATCAATATTCGTCGTGAAACTCGACATCACGGGTCTACGCTGCAACCTTTGCAAAGTACCACTGGATAAACTCGAAGATTTAACCACGCATTTGAAGGAGGAACACAACAAGTCACTCTACACCGATATCAAAAGCCAGACCATATGCTTTAAACTCGACAACGAAGAAATCAAATGCATGTTCTGCCACAACGAATGCAGTAGTTTTAAGAGGTTGCTTGAGCATATGAATCAGCACTATAGGAATTACGTTTGTGAGATCTGTGACGCTGGCTTCGTAACTCAGAGGATGTTAAGTACGCATTCTGATGGACACAAGCATGGCCAATACGAATGCGATATCTGCAAGAAGGAGTTTGACAAATTGAGATCCCTTAAGTACCATGTCAGAACGGCACACTCTGGATTGAACAGGCACAAATGCTTCCAATGCCGAGAGAAATTCGCCACTGTGAAACTCAAAAAGGATCACATGACTTTAGTGCACGGAGCCCAATTCGCAAGGCTACCTTGTTTAGCTTGCGACAAGACTTTCAGAGACAAAAACGCTTTGAGAATTCACACGCAAAGGGATCATTTGATGGAGCGGCGTTTCAAATGCACTGCTTGCGACAAAACGTTCTACACAAACGGCCTGTTGAAGAACCATATGGTTATGCATTCGGGGGTTCGCGCTTTCAAATGCGAGGTTTGCGGGAAAGATTTCGCTAGGAAGAAAACCCTGCAGACTCATATGCGTACTCACAAAGATGAGAGCAACTTTGTCTGCAAGATTTGTCAGCAACATTTCTATAATCAGGCGAGTTTGGACGCTCATGTGGAGTTACATGCGAGGCAGTTTAACTGCGAGCGTTGTGATCAGGCGTTTGATTCGTTGCCTAACTTGCAAGCTCATATGATGGCTATGCATGGAGAAATTGGGTAA
- Protein Sequence
- MLRCASEKAAAWSILALILFCNERAGCLPDGERQPNAEKAVTEYVTTITEAETTTTKELATTQNDNEDIDEIAKQVHNLRAILMSTNATPIRRFTTKGYVCSFCRKQFNDPADLKQHTLTEHDNETKETILKKIDFRHVTIKLDITSLECNICYEAIGNLEELNVHLKGHGKVIYTDVNTTYILLPFKFDDVLLKCAICDTAEFTNTPSLQNHMYTHYKKHECKICGEGFASPKMISNHYKRRHNLGEFRCEYCPFIFETRYKKRCHVISAHEELKRLKCGYCKRSFQSYDKKCTHMLTQHDVILPILECNACGKAFSFLSNVGKVAIKSEVETNWGLTIKKIKSETDPNKTNEIECPPQVTRLNFRLPDVIDTPSDSNGDAKHKRRCNTKNKLQQVNFKITSVTQVQNEIRQAIGNRNVKGAVKPKARKVALKIELNPTPDVKDGELKTSLELDKHRHNIRMIMHYSNATPIRTHYVGNGYACCFCDQFFPKAADLKSHTIQNHDKKEKIKFMQKAFLSIFVVKLDITGLRCNLCKVPLDKLEDLTTHLKEEHNKSLYTDIKSQTICFKLDNEEIKCMFCHNECSSFKRLLEHMNQHYRNYVCEICDAGFVTQRMLSTHSDGHKHGQYECDICKKEFDKLRSLKYHVRTAHSGLNRHKCFQCREKFATVKLKKDHMTLVHGAQFARLPCLACDKTFRDKNALRIHTQRDHLMERRFKCTACDKTFYTNGLLKNHMVMHSGVRAFKCEVCGKDFARKKTLQTHMRTHKDESNFVCKICQQHFYNQASLDAHVELHARQFNCERCDQAFDSLPNLQAHMMAMHGEIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -