Celi012588.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026076.1:16935336-16937075[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0028 0.22 12.7 1.8 1 23 82 105 82 105 0.95 2 16 4.8 3.7e+02 2.5 1.6 2 23 132 154 131 154 0.89 3 16 0.19 15 6.9 1.1 2 23 177 198 176 198 0.96 4 16 0.038 3 9.1 0.0 1 23 202 224 202 224 0.93 5 16 0.00082 0.064 14.4 0.1 2 23 232 254 231 254 0.91 6 16 0.0043 0.33 12.1 2.0 1 21 262 282 262 285 0.89 7 16 0.00099 0.077 14.1 1.1 1 23 291 314 291 314 0.98 8 16 4.5e-05 0.0035 18.3 3.5 1 23 321 343 321 343 0.98 9 16 2.2e-06 0.00017 22.4 1.6 1 23 349 371 349 371 0.99 10 16 0.0026 0.2 12.8 0.4 1 23 377 400 377 400 0.96 11 16 0.028 2.2 9.5 4.0 2 23 407 428 406 428 0.95 12 16 3.1e-05 0.0024 18.9 1.2 1 23 434 456 434 456 0.98 13 16 0.00021 0.016 16.2 0.8 1 23 466 489 466 489 0.97 14 16 6.3e-06 0.00049 21.0 0.2 1 23 495 517 495 517 0.98 15 16 5.2e-05 0.0041 18.1 2.5 1 23 523 545 523 545 0.98 16 16 4.5e-05 0.0035 18.3 0.2 2 23 552 574 551 574 0.96
Sequence Information
- Coding Sequence
- ATGAAATTAGAGGTCTTTCTTAAACCTCACGATGTTGCTAGGAAAAGCGGTAATAAGAAAAAAGAGCATTCTGTGCCGGCATCAGTAACAAACTTACTGAAGAAGCATAAAATATACTGTAAGAGACCGCCGGAGCCGGACGTAGATCATAAGTTGGAGCTAGATAAACAGCGGCATAACATTCACACGATCATGCAGAACTCTAACGCTACACCGTTTCGAGCCTACCACGTAGACGACGGATACGCGTGCTGCTTCTGCAATGAATTCTTCGAAAACGCTGCAGATCTCAAGACCCACACAATAAAGACACATAGCGAGGAAAAACACAGATTTAAGGAAAACTCAACCTCTATCTTCACTTACGTAGTGAAGTTGGATGTTACGGGATTGTGTTGCAACCGTTGTAATACGAAAATGAATACGCTAGACGATCTTATACTACATTTCTTGGAATCACATGAGATAGCCCTTCACAGTGATATTAAGAATCAAATAGTGTGCTTCAAATTCGAATCCGAAGAGATCCGATGCATGTTTTGTTCTAGCGAGTTCAGCAACTTCAAATTCTTGCTCGAGCATATGAATGAGCATTATAGGAATTACGTGTGCGTTGGCTGCAATGCCGGCTTTATCAACCATAGGATGCTCGTGGCGCACGCTGACGGGCACGACCTTACTGTCGGTGAAGTCAAATGCCCCATCTGCGATGAAGTCTTCGATAAGCTGGCTAAATACAAACGTCACGAGATACTAGCCCATTCTGGTTTCGATCTGACCTCCCACAAGTGCCTTCACTGCGGGAAAGATTTCAAAACGGATGAACGTTTAAGGGATCATGTGGTGGAAGAACACAAAGGAAGACACGCTTATAAATGCGGTGGTTGTAATAAGACGCATCCCACGAAAAACCTATTGATAGCACACACTAGGCGAGTTCATTTGCACGAGGAAAAGCATTTCAAATGTGACGTGTGCAATCGAAGTTTTTACGAGCGGCACCTGTTAAAAAACCACATGGTGAGGCACTCCGATTCGAGGCAGTTCCAGTGCGATATGTGTGCTAAAATGTTTAAGTCGAAAAGGACGTTGGTTCAGCACATTAGGACGCACAAGTTGAGAGGGGAATTCGTATGCTTAGCTTGCGAGGAAACTTTCTTCAGGAAGACCTATCTTGATGATCACATGCGGCTGGTTCACATGAAAGAGATCAGGACTAAATGCCACGTTTGCGACAAAGTGTTATATCAGTCTCAAATGAAGCATCACATAGCGAGACGTCACCCCGATCTACGAACGTATCAATGCGAAGTCTGCTCAGAAGTTTGCAGGTCGAAATACATGTTGATACAGCACATGGGCACGCATAACGATTTCAGACCCCAAAGCAAGGAGTACGAATGCCTAGCTTGCGGCAGAAAGTTTAATAGGAAGATCTATTTGGTGAAACACACGCAAAGAGTCCACTTGCTGGAGAAGCGTTTTGTTTGCGACCAGTGTGGTAGAAGATTCGCTGATACGACAGCGTTGAAGAATCACCTGGCTACTCACTCTGCGGCGAACAAGTTTCAGTGCTTCGGTTGTCCTAGGACGTTTAAAACTAAGAAGACTATGATGAACCATGCTCGCAATCATATGGAGGAGCGGAAGGTTAAATGCGAGATCTGTCAGCAGGCTTTCATATATCCTTACCTCTTGAAAGAGCATATGAAACAAACGCATAAGATCATTAGTTCTTAA
- Protein Sequence
- MKLEVFLKPHDVARKSGNKKKEHSVPASVTNLLKKHKIYCKRPPEPDVDHKLELDKQRHNIHTIMQNSNATPFRAYHVDDGYACCFCNEFFENAADLKTHTIKTHSEEKHRFKENSTSIFTYVVKLDVTGLCCNRCNTKMNTLDDLILHFLESHEIALHSDIKNQIVCFKFESEEIRCMFCSSEFSNFKFLLEHMNEHYRNYVCVGCNAGFINHRMLVAHADGHDLTVGEVKCPICDEVFDKLAKYKRHEILAHSGFDLTSHKCLHCGKDFKTDERLRDHVVEEHKGRHAYKCGGCNKTHPTKNLLIAHTRRVHLHEEKHFKCDVCNRSFYERHLLKNHMVRHSDSRQFQCDMCAKMFKSKRTLVQHIRTHKLRGEFVCLACEETFFRKTYLDDHMRLVHMKEIRTKCHVCDKVLYQSQMKHHIARRHPDLRTYQCEVCSEVCRSKYMLIQHMGTHNDFRPQSKEYECLACGRKFNRKIYLVKHTQRVHLLEKRFVCDQCGRRFADTTALKNHLATHSAANKFQCFGCPRTFKTKKTMMNHARNHMEERKVKCEICQQAFIYPYLLKEHMKQTHKIISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -