Celi012621.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026076.1:17201527-17210442[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 1.4 1.1e+02 4.2 1.1 1 23 57 79 57 79 0.96 2 26 7.5 5.8e+02 1.9 0.0 2 23 104 126 103 126 0.90 3 26 0.0034 0.26 12.4 1.8 1 23 177 199 177 199 0.89 4 26 0.0099 0.77 11.0 0.4 2 23 205 226 204 226 0.96 5 26 0.019 1.5 10.0 3.3 2 23 231 253 230 253 0.95 6 26 0.0053 0.41 11.8 1.6 2 23 260 282 259 282 0.95 7 26 0.0057 0.44 11.7 0.0 2 23 289 310 288 310 0.96 8 26 0.0052 0.41 11.8 1.8 2 23 316 338 315 338 0.95 9 26 0.001 0.079 14.1 1.8 1 20 372 391 372 393 0.95 10 26 0.94 73 4.7 0.2 3 23 423 444 421 444 0.93 11 26 6.8 5.3e+02 2.0 0.5 2 23 467 489 466 489 0.87 12 26 0.023 1.8 9.8 0.2 1 23 493 516 493 516 0.94 13 26 5e-05 0.0039 18.2 0.6 2 23 520 542 519 542 0.94 14 26 0.0044 0.34 12.1 0.4 1 23 547 570 547 570 0.95 15 26 6.2e-05 0.0048 17.9 0.3 2 23 578 600 577 600 0.95 16 26 0.43 34 5.8 0.5 2 23 607 628 606 628 0.89 17 26 2.1e-05 0.0016 19.4 1.0 1 22 634 655 634 658 0.91 18 26 0.04 3.1 9.1 2.7 1 23 702 725 702 725 0.92 19 26 0.058 4.5 8.5 1.3 2 23 751 773 750 773 0.94 20 26 0.2 16 6.8 1.1 3 23 797 818 795 818 0.88 21 26 0.0066 0.52 11.5 0.0 1 23 824 847 824 847 0.94 22 26 0.057 4.4 8.6 0.1 2 23 874 896 873 896 0.96 23 26 4.1 3.2e+02 2.7 2.8 1 13 903 915 903 926 0.74 24 26 0.00056 0.044 14.9 0.2 1 23 932 954 932 954 0.95 25 26 0.028 2.2 9.5 4.1 1 23 960 982 960 982 0.97 26 26 4e-06 0.00031 21.6 1.8 1 23 988 1010 988 1011 0.96
Sequence Information
- Coding Sequence
- ATGGACGAAGGATCTAATTGGAGTGACACTCAAGATTCGTTCGCTGTCAGTTCAGACGACGATGATGAACCGCTGAAGCCAGATAAAAGACTTTTGTCTATGCGAGAAAACGTCACACAAGTCGTAGTCTACTCGACCGTCCTGCCTTTCCGTTGGCTCTCCACCTGTTATAGATGCTTTTACTGCTACGATGTATTCCAAGAAGTGTCTACCCTCAGAAGCCACAATATTATGCACAAAAGAGAGGAAATACGGACTGCCATGCTCAAGTACTGGGAGAACGATGTGTTTGTTGATGTGTCAGAAATCGTCTGCACGCTGTGTCTTGAGGAACAGAGCAGTTTGGATGACCTCATAGACCATTTAACGACAGAGCATGGAGTGAGCTACGACGTTGACACGACTCAGTGCTTCAAACCTTTCATTTTGACTGACGAGGAAGTAGCATGCGGACTCTGCGACGAAAGATCCAGGTTGTTCAACCAAGTTTTGCAACACGCAACGAAAGCTCACAAAAACCTTGAGGATTACCTGTGCAACGAATGCGGCAGATCGTTTAATAAGCAGCAATTCAAACAGCATGTATACAACGAGCATCGGAGCAAGACGGTGAAGTGCACTCAGTGCGGGGAAGTCTTCTCAGTGTACACCATAAGGACCCACATGAAAAAGGTGCACAATAGGAAAGTGAAATGCAAGATGTGCAAAGAGACGTTTGATACGCATTACAAGAAGCAGCAGCACATGACTATAGTGCACAGAAGCCGGGAAGAGATCCGGTGCCGTCACTGCCCTAACGTTTTCTACTTTAAAAGCACTATGGAACGCCACGTCCGAGAGGTGCACTTGAAGGTGATGAAGGTTGTGTGCGCGATTTGCGGCTGGACTGGGGTTTCTGAGTCCCGGTTGAGAATACACATGGAGATGCATCAAGAGAGGATTGTACCGTGCACTGTGTGTAACCAGAAGTTCAAGAGTGATAAGCATGTGAAGCAGCATTACCGATTAGCGCATGCGGGTAAAGACTCAAAGAGAGACCACGCTTTAGCAGCATTGCTAACACTTCTCATAGAACAGACGACAATCCTACCATTCCAATGGCACAGGAGCAAGTACAAATGCTTCTACTGCACCGCTGTATTCGTCCACAGCTCAGAACTGAAAGACCACAGGATTCACTGCCAGGACACAATAGAACTGAGCGAAATTATCAGTTGTATCAGATACAGAGACGGTAGGGTCAAGCTAGACGTATCGGAGTCCATCTGCACAGAATGCAACGAAAACGTCATAGATTTTAACGGGTTTATTAAACACCTGTCTCTTACACACGAACTGGTGTTCGACGAGGAGATCGTAAAGCTTTTCGATCAGTTCAAGCTGTCAGACGAAGGGTTGAACTGTCTCGAATGCGGACAGTACTTTCAATTCTTCGGGCCTTTACTAATGCACTACTATAAGTTTCATATTCATCAGCACGTCTGCGAGATTTGCGGGCAAGCCGTTCGCGGCAAACAGAACATCTACAACCATATGACGCAAGTACATGCGCTCAAAGAATGCAAGTTTTGCGGCCAAACTTTTACAACACAATACGCTTTGTACAACCATATAGGACGGGAGCATAAGACGGACGACTTCAAATGTACCATTTGCAACGTCGTTCTGCCTAATAAGTACATGAAGAAACGCCACATGGCGCTGGTTCACAATCTGAAGTGTTTTCAAATCGTTTGCGAGATTTGCTCGAAGGTCTTCACCCGGAATAGTAAGTACGTAGCGCATAAGCAAAGCGTGCATCAGAAGAGGAAGAATTGCGCTTGTGAGATATGCGGCTTCAAGGCGTTTAACGAGGAGGTGTTGAAATTGCATATGGTGAGGCACGGTGAGGCTCGTCCGTTCAAATGTGACGTGTGTGAAGTAGCCTTTCGCAGGAAGACGAATCTTAGTAAGCATATGACGTCTGTTAAGCATAAGCGGAATTATTTTGAGGACATCTACCAGCGTCTAACCTTGAACCAACGGAAAAACGACCTCGTAAAACTATTCACCGTTATCATAGAGAATTCCACAGTAATGCCTTTCAGGTGGCACTGCAACAAGTACATGTGTTTCTTCTGCGGCTGCCCCTTCTCCAATAGCATCTTCTTAAAAACACACAATCAAGAAGAGCACGGAGACACGAAAATACGAAGCGCGTTTCGCAGTCTTCTCCGGAACAGCAAAATCAAGTTTGAAATATCAGAGATTAAGTGCAAGATCTGTTTAGAGCAGTTCGAAAAGCTGGACCATCTTCTAGACCATTTCAGGGACTCTCACGATTTGAAAATCAATCAGAGCTCGAGAACGGAACTGTACGCGTTTAGGTTGACCGAAGAGAAGATGAACTGCGATGAATGCGGCGAAGAATTCCAATTCTTCGGAACTCTATTAAGGCATTTCCACGCGTTCCACAACAAAAACGAGCCGTACCTCTGCGAGATTTGCGGCATGGGTTTCGTAGCGAAAGCAAACGTCACGGCACACGTCAAAAACGTTCACTCACGGAACAGCCCATGCGGGATATGCTTGACAGATCGGAAAGCTTGCAAACATAATCGCAAGCTACACACCTCAATCAAATGCTCGAAATGCCCCGAGATCTTAGCCAGTCCCTATTTGAGAAATCGACACTTGGCGACGGTTCACGACGTCAAAGGTTACCAGTTCCCCTGCGACGAGTGCCCACGCGTCTTTCCAATACGGTGTCGTCTACTTTGCCATAAGCAACGAGTGCATCTGAAGCAGCGGAGCTTCGCTTGCGAAATTTGCGGGTACAGAGCGTTTAACAAAGACTATTTGGCGCGTCATATGGTGTCTCATGACGACGCCAGGCCGTTTGAATGCGAGTTCTGCAAGAAAACGTTTCAGAGGAAGAAGACGCTTGACTTTCATCGTAGGATACATACGAATGATAGGAGGTACGTGTGTAATCAGTGTGGGAAGGCGTTCGTGCAGACGACTAGTTTGAAGCTGCATTATCGCGTGCATCATCCTAAAGAGAGCGCTCGTGAAGCAGCTTGGAGTTAG
- Protein Sequence
- MDEGSNWSDTQDSFAVSSDDDDEPLKPDKRLLSMRENVTQVVVYSTVLPFRWLSTCYRCFYCYDVFQEVSTLRSHNIMHKREEIRTAMLKYWENDVFVDVSEIVCTLCLEEQSSLDDLIDHLTTEHGVSYDVDTTQCFKPFILTDEEVACGLCDERSRLFNQVLQHATKAHKNLEDYLCNECGRSFNKQQFKQHVYNEHRSKTVKCTQCGEVFSVYTIRTHMKKVHNRKVKCKMCKETFDTHYKKQQHMTIVHRSREEIRCRHCPNVFYFKSTMERHVREVHLKVMKVVCAICGWTGVSESRLRIHMEMHQERIVPCTVCNQKFKSDKHVKQHYRLAHAGKDSKRDHALAALLTLLIEQTTILPFQWHRSKYKCFYCTAVFVHSSELKDHRIHCQDTIELSEIISCIRYRDGRVKLDVSESICTECNENVIDFNGFIKHLSLTHELVFDEEIVKLFDQFKLSDEGLNCLECGQYFQFFGPLLMHYYKFHIHQHVCEICGQAVRGKQNIYNHMTQVHALKECKFCGQTFTTQYALYNHIGREHKTDDFKCTICNVVLPNKYMKKRHMALVHNLKCFQIVCEICSKVFTRNSKYVAHKQSVHQKRKNCACEICGFKAFNEEVLKLHMVRHGEARPFKCDVCEVAFRRKTNLSKHMTSVKHKRNYFEDIYQRLTLNQRKNDLVKLFTVIIENSTVMPFRWHCNKYMCFFCGCPFSNSIFLKTHNQEEHGDTKIRSAFRSLLRNSKIKFEISEIKCKICLEQFEKLDHLLDHFRDSHDLKINQSSRTELYAFRLTEEKMNCDECGEEFQFFGTLLRHFHAFHNKNEPYLCEICGMGFVAKANVTAHVKNVHSRNSPCGICLTDRKACKHNRKLHTSIKCSKCPEILASPYLRNRHLATVHDVKGYQFPCDECPRVFPIRCRLLCHKQRVHLKQRSFACEICGYRAFNKDYLARHMVSHDDARPFECEFCKKTFQRKKTLDFHRRIHTNDRRYVCNQCGKAFVQTTSLKLHYRVHHPKESAREAAWS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -