Celi006447.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026074.1:966341-968665[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 6e-06 0.00046 21.1 4.0 1 23 6 29 6 29 0.95 2 20 0.00071 0.055 14.5 0.3 2 23 35 57 34 57 0.95 3 20 1.1e-05 0.00082 20.3 0.2 2 23 66 88 66 88 0.97 4 20 5.1e-06 0.0004 21.3 2.0 2 23 97 119 96 119 0.95 5 20 1.2e-05 0.0009 20.2 2.8 2 23 127 149 127 149 0.96 6 20 8.9e-06 0.00069 20.5 2.4 2 23 157 179 156 179 0.96 7 20 7.6e-07 5.9e-05 23.9 4.3 1 23 185 208 185 208 0.98 8 20 0.011 0.86 10.8 0.9 2 23 244 266 243 266 0.94 9 20 0.004 0.31 12.2 1.0 1 23 295 318 295 318 0.98 10 20 0.12 9.5 7.5 1.4 2 21 326 345 325 346 0.93 11 20 0.17 13 7.1 4.6 2 23 355 377 355 377 0.94 12 20 0.0061 0.47 11.6 6.1 1 23 401 424 401 424 0.97 13 20 0.00013 0.01 16.9 0.7 2 23 431 453 430 453 0.96 14 20 0.00012 0.0095 17.0 1.9 2 23 460 482 459 482 0.94 15 20 0.0075 0.58 11.3 2.2 1 23 488 511 488 511 0.97 16 20 0.19 15 6.9 7.1 2 23 519 541 519 541 0.95 17 20 0.00075 0.058 14.5 0.2 1 23 548 571 548 571 0.96 18 20 0.087 6.8 8.0 0.4 1 23 578 601 578 601 0.95 19 20 0.024 1.9 9.7 2.2 5 23 618 637 615 637 0.89 20 20 1.2 94 4.4 0.7 3 23 659 680 658 680 0.93
Sequence Information
- Coding Sequence
- ATGTCTCAAGGAGATTTTATTTGCGACTACTGCAGCCGCTCGTTCACAAGAAAATACAACCTTCAGACGCACATAGAAAACTGCCATATAAACTCAACATGCTACTGTGAAATCTGCGACCAGAAATTCGGGAGCCCAGGTGGCCTACAATTACATCTCTCTCGGGGTCACAACAGATATGGCCAGCCTTTCCCAGAATGCGACATCTGCGGACGCATATTTACAAGAAAACAGAATATTATGTCCCATATGATCACTGTGCATCTTCAAGGCATCGGTCCTGAGATTCGGTGCCGAATTTGCCGAAAAACCTTCACTACTGAAAGGAATTTGAAGAGACATATCAAGCTGTTACATAACCCTGATCTGCAGTATCCAACATGTGATGAATGTCACAAAACTTTCAAGAGCAAACATACCCTAGTAGCGCATATACAAGTAGCTCACAACTCCAGTGATAGAATTGTTAAATGTCATATGTGCGAAAGAGTGTACACAAATAATAGAAATTTGAAACGGCATATTGAGATGTTTCATGGAGAGAAAGAAGACCACAAATGCCATATATGTCCTAAAATGTACACTTCCAATCAGAGTCTCAGACGTCATATCAGAACTGCTCACAATTCTGATGAAGACAGCTTGCAGTGCGAGCTAAAATTGATAGACTCGGAAATTAGAGATTGGCAAAGCGACGACAACTCCAATGTTTCCTCTGAGGACACGATCTCTTGCGAGACTTGCAATAAAGTCTTTAGCGAAGAATCTATTTTACGCCAACATGTAAAGCACGAACACTCGTTTGATGCATTCTACGAATACTGCCGTAACTACCTACTAAAACTTGCTAAAAAAGATCAGCCTATTAGCAAGCAGACAGTGTACAAATGTGAGTCCTGCTTCACAGCTTACTTCAACGTTTACGAACTCAAAGATCATATGAAAGTGAACCATGATACGGAATATAACTTGTGCACTTGCAATGTGTGCTTCTCCAAGTTTTATAGCCAGGAAACTTTAATTGAACATAGGAATATATGCCTCCCACCACCTGATGTCAACTCTTGCAGCCACTGCGATAAGCTCTTCACTGATATATCTAGCTTACATTTCCACACAAGGATTTTCCATCCGCAAGCCCAACTTGCCGATTCTAATATAACGTCAACGAAATCTGACGATTCCCCCAACTTCAATTCTTTCAAATGCGAGCACTGCAACCGGATATACTACAGCGATAGGTCTCTCAAACATCATATTAAACTGAAACACACGACAGACGAAGTTGTTGAATGCGGCTATTGTAACAAAATCTGCAATAACAAGTACTACTTAGCGTCTCATATTAAAATCGTGCATAGCGCTGTCGATTTGTCGAAATGTGATTATTGTGACAAGCTTTTCAAATCCAAACGCAATATTCGGAGACACATCGAGTATACGCATATGGGGATGCAAAGATACAAGTGCATTGAGTGCGAGACCCTTTTCAAAGAAAAGCGGAGTCTCCGAAAACACGTCCGGACTAAACATCCAAACTCAGCGTCGTTCCCACAATGCCATATCTGCCATAAGAGATTCGAATCCGCCAAATCTTGCAAAATACATCTCAAGCTTCTTCACTCTTTTAACATGAATACTTATCCGTGTGACTTGTGTTCTGTGTCGTTTGGATCGAAAGAGACGCTCAAAATACATTTGGAGTCAAAACATTTAGCTGAGGATGAAATCTACAAATGCGAAGAGTGCAATTTAGTTTTAAAAGGATCTCAAAAGTTTGAAGAACATAATGAAACAAGCCACGCTTACGTCGACCCTGTAGCGAAACAGAAAGTTCTGCCGCGCTGTATTATATGCATTAAAGACTTTAGCACGCGGAAAACTTTGAGGCGTCACATCAAGAAGTTCCACGAGGAGTTCCAAGCAGATGAACTTGCCAACTACGGGTGTAAGAAGCGTGTCTTCAATGTCGACTGCGAAGAATGCCTAAAGAACTTCAACGATGATTTCTACGTCAAGTTGCATAGCAAAGTTAAGCATATCAAAGATTCTATAGTGTTCAAATGCGAGACATGTTGCTCCAGGATTAGCTCTTTAGAATTCTCAATACAGAGGCATAGGATTTTAAACTTTGATGCGATGAAATCGAAAGTGATCTTGAGCGATCTTTGCACGACGCAGATGAGTGACGACGAGGCTTCCTATTCGGGGTTCGGGTCGTTGCATAAATATATGGAAGCAGAGAGTACGACTGTGGATATTAAGGTTGAGCAGGACGAAGAAATGGTGCCAAATGAAGTGAAGGCTGAGCCTATGTCTTCTTAG
- Protein Sequence
- MSQGDFICDYCSRSFTRKYNLQTHIENCHINSTCYCEICDQKFGSPGGLQLHLSRGHNRYGQPFPECDICGRIFTRKQNIMSHMITVHLQGIGPEIRCRICRKTFTTERNLKRHIKLLHNPDLQYPTCDECHKTFKSKHTLVAHIQVAHNSSDRIVKCHMCERVYTNNRNLKRHIEMFHGEKEDHKCHICPKMYTSNQSLRRHIRTAHNSDEDSLQCELKLIDSEIRDWQSDDNSNVSSEDTISCETCNKVFSEESILRQHVKHEHSFDAFYEYCRNYLLKLAKKDQPISKQTVYKCESCFTAYFNVYELKDHMKVNHDTEYNLCTCNVCFSKFYSQETLIEHRNICLPPPDVNSCSHCDKLFTDISSLHFHTRIFHPQAQLADSNITSTKSDDSPNFNSFKCEHCNRIYYSDRSLKHHIKLKHTTDEVVECGYCNKICNNKYYLASHIKIVHSAVDLSKCDYCDKLFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFGSKETLKIHLESKHLAEDEIYKCEECNLVLKGSQKFEEHNETSHAYVDPVAKQKVLPRCIICIKDFSTRKTLRRHIKKFHEEFQADELANYGCKKRVFNVDCEECLKNFNDDFYVKLHSKVKHIKDSIVFKCETCCSRISSLEFSIQRHRILNFDAMKSKVILSDLCTTQMSDDEASYSGFGSLHKYMEAESTTVDIKVEQDEEMVPNEVKAEPMSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01209552;
- 90% Identity
- -
- 80% Identity
- -