Celi027037.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026070.1:18609890-18622323[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.032 2.5 9.4 7.0 1 23 223 245 223 246 0.95 2 16 0.0064 0.5 11.5 0.6 1 23 255 277 255 277 0.95 3 16 3.2e-05 0.0025 18.8 1.0 2 23 284 305 283 305 0.97 4 16 1e-05 0.00079 20.4 0.1 1 23 311 333 311 333 0.98 5 16 2.8e-06 0.00022 22.1 1.0 1 23 342 364 342 364 0.97 6 16 0.017 1.3 10.2 0.0 2 23 371 392 370 392 0.95 7 16 0.41 32 5.9 0.3 1 16 398 413 398 415 0.81 8 16 0.017 1.3 10.2 0.0 2 23 478 499 477 499 0.95 9 16 0.12 9.5 7.5 0.3 1 17 505 521 505 522 0.86 10 16 0.017 1.3 10.2 0.0 2 23 585 606 584 606 0.95 11 16 0.025 2 9.7 11.4 1 23 612 634 612 634 0.96 12 16 2.7e-07 2.1e-05 25.3 0.3 1 23 640 662 640 662 0.98 13 16 1.3e-05 0.001 20.0 1.6 1 23 668 690 668 690 0.99 14 16 0.00093 0.072 14.2 1.1 1 23 696 717 696 717 0.94 15 16 0.00058 0.045 14.8 0.3 1 23 723 745 723 745 0.96 16 16 6.8e-06 0.00053 20.9 1.5 1 23 751 773 751 773 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTGTTAGACGGCTCTGACGAAAACACGATTCAAACAGAAACAAGCAAAGAGAACATCATTGAAATCGAAATACCATATCCTTTATTCCAATATTTAAGTTCAGAGGAATGTAATTTACAGAATATTTGTCGTTTATGTCTCTCCATCAACGATGAAGAGCTATATCCATTGTTTTCTGAAAAAGAAAACAGCGTTTTAGCCAATATGATCATAGCCATATCGGAAGTGCAGATGAATGCAGCAGATGGTCTCCCATCTAAAATCTGCCCAGGATGCCAAACAGAAGTAATGAACTATTACGAGTTTAAAATGAAATGTGTGAAAGCAGATTACACATTAAAATCTGTACTGAAAGGTGAATTTGATACCAAAGAAACAAAATGCAATAATAATTTAGGGACTAAAGCAAAACCTGACTATGTTAACAGTGGTGAACCTGATGTTGATGTTGCTCACAGAAAGGAGGAAGTAACAGAAATTACAGATATTGATTATCTAGAAGATATAAAATATTCTATGAGTGATGATGAAGCTCTCTGCATAGTGCGGGATACGAAAAACAATGAAAAGGAAATAACAATTATAGATAATGATCCAAATTCTTTATACAAGGAAGTTATTCTGAAAGAGGAAACAAAAAAAGGTACAAGGAAAACAAAACATTATTGTATGGTTTGCCCGAAGAAATTTCATAAACTTAAGTCGCTAAGGGCCCACGTAAACAAACACCACGCGGAGATAGCGTCGGAGTGCCGGCATCCGTGCCCCCAGTGCAAGGACTCCTTTACATCGGAGTTCGATCTCAAGATACATGCGATGCTGCACAGTCAGGACGTGAACTGGAAATGCACGGAGTGTCAAAAAGATTTTAATGGTAAGCAAGCCCTCCGTCGGCACATTCAGCGGCACATGCAGTCGAAGCCGTTCCCGTGCGTTGTTTGCGGCAAGTCGTTCGTAGAGCTATACGCGCTGCGGCGGCACGCGCGCGTCCACACCGGAGAACGACCAGAGAAGAAACACGTCTGCCATGTCTGCGATAAGAGTTTCAGCGTGCGTGGCGCGCTGGCGGCGCACATGTCGCGGCACGGCGCGGAGCGCGGCTGCGTGTGCGGCGCGTGCGGCGCCGCCTTCCCCTCCGCGCGGCTGCTGGCGTCGCACGCGCGCGTGCACTCCAGCGACAAGCCGCACGCCTGCCGCCACTGCGGGAAGAGTGTTACATCTACTCACTCTGTCACACGCACGGCGCGGCGCGCGGCTGCGTGTGCGGCGCGTGCGGCGCCGCCTTCCCCTCCGCGCGGCTGCTGGCGTCGCACGCCCGCGTGCACTCCAGCGACAAGCCGCACGCCTGCCGCCACTGCGGGAAGAGGTAACACGCAGTGTTACATCTACTCACTCTGTCACACGCACGGCGCGGCGCGCGGCTGCGTGTGCGGCGCGTGCGGCGCCGCCTTCCCCTCCGCGCGGCTGCTGGCGTCGCACGCCCGCGTGCACTCCAGCGACAAGCCGCACGCCTGCCGCCACTGCGGGAAGAGTGTTACATCTTCTCACTCTGTCACACGCACGGCGCGGTGCGCGGCTGCGTGTGCGGCGCGTGCGGCGCCGCCTTCCCCTCCGCGCGGCTGCTGGCGTCGCACGCGCGCGTGCACTCCAGCGACAAGCCGCACGCCTGCCGCCACTGCGGGAAGAGGTAACACGCAGTGTTACATCTACTCACTCTGTCACACGCACGGCGCGGTGCGCGGCTGCGTGTGCGGCGCGTGCGGCGCCGCCTTCCCCTCCGCGCGGCTGCTGGCGTCGCACGCGCGCGTGCACTCCAGCGACAAGCCGCACGCCTGCCGCCACTGCGGGAAGAGGTTTCGGCACGAGTCCACACGTAACACGCATCACCGCACGCACACGGGCGAGCGGCCTTTCGTGTGCGCGCAGTGCGGGAAGGCCTTCATACAGAAGTCCAACATGACACTGCATATTCGCACACACACCGGTGAAAAGCCGTATTCTTGCCCGTTCTGTGAGCGCAAGTTCTCTTCGGGGTCTACACTGAAAGCACACAAACGCACGCACACCGGTGAACGGCCATTTTCGTGCAAGGTTTGCGGGAAAAGCTTCGCGCGGCTCAACATGAAGCTTCATATGCGGCTGCACAGTGGTGAGCGGCCGCACGCCTGCCCCGCCTGCCCGAAACGATTCGCCACCGCACCGCGCCTGCGCGATCACTACCGCATGCATACCGGTGAAAAGCCTTTTGAATGCGCCATGTGCACCGAAAAGTTCACAACAAAATCTCAGCTCATAAAGCATGTAAAGAAACACGAAAAGAAAAAGAAAACGGCCAAGAAAGGAGTAGTTATGTTAATGCCAGTCACGGTTTCTGATAAAAGTATATCAAAAATACAGCCAGAAAATAAAGCAGATGAATATGTGTATATGGACATCAATACTGGGGCAAATGCATCAAATATCGGTCAAGCCAATTTATGTGCAGTGCATGAAGCTCCATTACAACCTAATCAGGGATTACTATACCAAGATGATGGTGATAAGACGAAAGTCTTTGTTCTAGGCAATGAGCCGAATTTAGTTCCAAGCGGTGTTAGTTACGTCAATGATGTTAATTATAACGATGTAAACTTAGTGACTGTCAACGAAGGAGAAGTAAGCATTTCTGCAGCCAGTGCTACAGTGGAGGGGGCCACAGTGAAACTGTATCAATATGACCAAAGTTTATTGCAAATACATACAGGTGGTGGACAGCTGACAATTAGTAGAATAAGTAGCAAAATGACGGCTAATTTTTAA
- Protein Sequence
- MEVLDGSDENTIQTETSKENIIEIEIPYPLFQYLSSEECNLQNICRLCLSINDEELYPLFSEKENSVLANMIIAISEVQMNAADGLPSKICPGCQTEVMNYYEFKMKCVKADYTLKSVLKGEFDTKETKCNNNLGTKAKPDYVNSGEPDVDVAHRKEEVTEITDIDYLEDIKYSMSDDEALCIVRDTKNNEKEITIIDNDPNSLYKEVILKEETKKGTRKTKHYCMVCPKKFHKLKSLRAHVNKHHAEIASECRHPCPQCKDSFTSEFDLKIHAMLHSQDVNWKCTECQKDFNGKQALRRHIQRHMQSKPFPCVVCGKSFVELYALRRHARVHTGERPEKKHVCHVCDKSFSVRGALAAHMSRHGAERGCVCGACGAAFPSARLLASHARVHSSDKPHACRHCGKSVTSTHSVTRTARRAAACAARAAPPSPPRGCWRRTPACTPATSRTPAATAGRGNTQCYIYSLCHTHGAARGCVCGACGAAFPSARLLASHARVHSSDKPHACRHCGKSVTSSHSVTRTARCAAACAARAAPPSPPRGCWRRTRACTPATSRTPAATAGRGNTQCYIYSLCHTHGAVRGCVCGACGAAFPSARLLASHARVHSSDKPHACRHCGKRFRHESTRNTHHRTHTGERPFVCAQCGKAFIQKSNMTLHIRTHTGEKPYSCPFCERKFSSGSTLKAHKRTHTGERPFSCKVCGKSFARLNMKLHMRLHSGERPHACPACPKRFATAPRLRDHYRMHTGEKPFECAMCTEKFTTKSQLIKHVKKHEKKKKTAKKGVVMLMPVTVSDKSISKIQPENKADEYVYMDINTGANASNIGQANLCAVHEAPLQPNQGLLYQDDGDKTKVFVLGNEPNLVPSGVSYVNDVNYNDVNLVTVNEGEVSISAASATVEGATVKLYQYDQSLLQIHTGGGQLTISRISSKMTANF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -