Basic Information

Insect: Crocallis elinguaria
Gene Symbol: -
Assembly: GCA_907269065.1
Location: OU026066.1:12282678-12287897[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0004 0.031 15.3 3.0 1 23 131 153 131 153 0.98

2 12 2.3e-06 0.00018 22.4 4.3 1 23 157 179 157 179 0.98

3 12 1.5e-06 0.00011 23.0 0.5 1 23 222 244 222 244 0.99

4 12 3.8e-06 0.0003 21.7 1.2 1 23 253 275 253 275 0.97

5 12 2.9e-06 0.00022 22.1 1.9 1 23 281 303 281 303 0.98

6 12 3.1e-06 0.00024 22.0 5.1 1 23 309 331 309 331 0.99

7 12 1.9e-07 1.5e-05 25.8 0.7 1 23 337 359 337 359 0.96

8 12 2.7e-05 0.0021 19.0 5.8 1 23 365 387 365 387 0.98

9 12 2.5e-06 0.00019 22.3 1.0 1 23 393 415 393 415 0.98

10 12 0.62 48 5.3 5.9 3 23 423 443 421 443 0.97

11 12 8.9e-08 6.9e-06 26.8 1.9 1 23 449 471 449 471 0.99

12 12 0.00045 0.035 15.2 0.2 1 20 477 496 477 499 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0004	0.031	15.3	3.0	1	23	131	153	131	153	0.98
2	12	2.3e-06	0.00018	22.4	4.3	1	23	157	179	157	179	0.98
3	12	1.5e-06	0.00011	23.0	0.5	1	23	222	244	222	244	0.99
4	12	3.8e-06	0.0003	21.7	1.2	1	23	253	275	253	275	0.97
5	12	2.9e-06	0.00022	22.1	1.9	1	23	281	303	281	303	0.98
6	12	3.1e-06	0.00024	22.0	5.1	1	23	309	331	309	331	0.99
7	12	1.9e-07	1.5e-05	25.8	0.7	1	23	337	359	337	359	0.96
8	12	2.7e-05	0.0021	19.0	5.8	1	23	365	387	365	387	0.98
9	12	2.5e-06	0.00019	22.3	1.0	1	23	393	415	393	415	0.98
10	12	0.62	48	5.3	5.9	3	23	423	443	421	443	0.97
11	12	8.9e-08	6.9e-06	26.8	1.9	1	23	449	471	449	471	0.99
12	12	0.00045	0.035	15.2	0.2	1	20	477	496	477	499	0.93

Sequence Information

Coding Sequence: ATGCTGGACACAATAATGTCATCATCTTGCAGGACTTGCATGAAAAACGATGTCAATTTAGTCTCCTTGTACGAATCATTGAAAATTGATGAGAGTAGGAACCTTCAACTGGTTGAATTATTGATGGAATGTACTGCAATACAGGTAAAGCAAGAAGATGGGTTGCCACAAAATCTTTGTCAAGAATGTACCAACGTGCTCCGCATGTCATTCTCATTCCGTCAACAAGCTGCCAATGCAGAGGAAGAGTTCAAAAAGCTACTCGCAGAACAAGTAAAAACAGAGATCAAAGTAGAATTTGAACCAGATTACTTCGATGACTTTAATGACTCTCAGCTGGAAATTACGAATACAGCAAATGATTATAAATTGGAATTGGAAGAAACAATCTACTCTTGTACAGAATGCAACAAAACTTATACAAAAGAAAAAAAATATCTCAAACATCTGGAGTCTCATCTATCAGGTTTTAGCTGCCCACATTGTGGCAAGTTTTTTCAGAAAAATTCTACATTACAAAAACATATATCTAAACATGAACAAGCTTCTCTAACTTGTAGTAAAAAAAACGGTATCAGTAGAACAACAACTGATGACAATCAGTTTAGTGATTTGTACACCACAGTCATAATTAAAAATGAAGATGGGGAAGATGAACACAGATACCAATGTCAGGAATGTGAGAAGTCATTTACAAAACCCAGATCATTAGGTATCCACATGAAAGTGCATGAACGGGAAAGAGATCAAATAAAATACATTTGTGATACATGCGATAAAGAATTTTACACAAAGCCATCATTGAAGAGGCATTTGAAACTTCATGTTGATAGAAAACCATTTCAATGTTTGAAATGTGAGAAGAGTTACTCGAGGAAAGACCAGTTGACTAGCCATGCAAATACACATAGAGATAATAAGCCTTATAAGTGTCCTCATTGTAGTAAAGCATTTTCCCAAATGTGCAGTTTGAAAGACCACATCCGTACGCACACAAAGGAGACTCCGTACCTTTGTTCCGAGTGCGGGAAAGGGTTCGCTAACAGTTCCAATCTGCGGCAACACATGTTCCGGCACACCGGAAATAAGCCCCACAAGTGCAAGTTGTGCCCTAAATCTTTCTGTACCAAAGGTCAAATGACAACTCACATGGTAACCCACACGGGCGCCCACCCGTACAAGTGCGACAAGTGTGGCGCTGCCTTTACCAAGTCCAACTCGCTCAAGAAACATACTATGATCCACTTGGGGCAGCGCCCGTTTGGGTGTGACACGTGCCTTATGCGTTTTACATGCAAAGACCACTTGAAGCGTCATAACCGCATCCACACCGGCGAGAAACCTTACAAGTGCAAGTATTGCGAGCGCGCCTTCACCCAGAGTAACGACCTTGTTAAGCACATGCGCTCACACCTAGGACAGAACATTTACAACTGCTCAGTCTGCGGCCTAGGGTTCCGTCTCCAAAGCGAGCTGAAACAACACTACCCTGTCCACTTCTGCAGCGACGACCCCACGCTCAAGAACCTTCTAGAACAATCCAGCATGAACCACAAGTTCCCAGAAGACAACCGATCAGAACCTCAACCAGACGTCAAGGAGAATCAGATTGTTAATAATATACAAGAGAAGTTTATGATTACCATCAATAGCATGGATGGTAGTAATGTGGTTGCTATAAATATTGAGCCCGAATCTAGTCTGCTGAAAGTATAG
Protein Sequence: MLDTIMSSSCRTCMKNDVNLVSLYESLKIDESRNLQLVELLMECTAIQVKQEDGLPQNLCQECTNVLRMSFSFRQQAANAEEEFKKLLAEQVKTEIKVEFEPDYFDDFNDSQLEITNTANDYKLELEETIYSCTECNKTYTKEKKYLKHLESHLSGFSCPHCGKFFQKNSTLQKHISKHEQASLTCSKKNGISRTTTDDNQFSDLYTTVIIKNEDGEDEHRYQCQECEKSFTKPRSLGIHMKVHERERDQIKYICDTCDKEFYTKPSLKRHLKLHVDRKPFQCLKCEKSYSRKDQLTSHANTHRDNKPYKCPHCSKAFSQMCSLKDHIRTHTKETPYLCSECGKGFANSSNLRQHMFRHTGNKPHKCKLCPKSFCTKGQMTTHMVTHTGAHPYKCDKCGAAFTKSNSLKKHTMIHLGQRPFGCDTCLMRFTCKDHLKRHNRIHTGEKPYKCKYCERAFTQSNDLVKHMRSHLGQNIYNCSVCGLGFRLQSELKQHYPVHFCSDDPTLKNLLEQSSMNHKFPEDNRSEPQPDVKENQIVNNIQEKFMITINSMDGSNVVAINIEPESSLLKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -